Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i21r
(367 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D) 138 8e-34
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden... 135 7e-33
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A) 130 4e-31
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ... 31 0.18
At2g44870.1 68415.m05586 expressed protein 30 0.41
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l... 27 3.8
At3g56410.2 68416.m06274 expressed protein 27 5.0
At3g56410.1 68416.m06273 expressed protein 27 5.0
At1g79670.2 68414.m09292 wall-associated kinase, putative simila... 27 5.0
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera... 26 6.7
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 26 8.8
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 26 8.8
>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
Length = 84
Score = 138 bits (335), Expect = 8e-34
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = -2
Query: 324 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 145
IDLLHP P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC C T+LC
Sbjct: 7 IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66
Query: 144 QPTGGRARLTEGCSFRRK 91
QPTGG+ARL EGCSFR+K
Sbjct: 67 QPTGGKARLQEGCSFRKK 84
>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
identical to cDNA ribosomal protein S27 (ARS27A)
GI:4193381
Length = 86
Score = 135 bits (327), Expect = 7e-33
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = -2
Query: 324 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 145
IDLL+P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC C TILC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66
Query: 144 QPTGGRARLTEGCSFRRK 91
QPTGG+A+LTEGCSFRRK
Sbjct: 67 QPTGGKAKLTEGCSFRRK 84
>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
Length = 84
Score = 130 bits (313), Expect = 4e-31
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = -2
Query: 324 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 145
IDLL+P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VV+C C T+LC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66
Query: 144 QPTGGRARLTEGCSFRRK 91
PTGG+A+LTEGCSFR+K
Sbjct: 67 TPTGGKAKLTEGCSFRKK 84
>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa] and damage-specific DNA binding protein
1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
CPSF A subunit region
Length = 1088
Score = 31.5 bits (68), Expect = 0.18
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = -2
Query: 360 RLCIKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVF 196
R+C + T AI L P++E + RL+ + SY +D GC ++ F
Sbjct: 717 RICHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSF 776
Query: 195 SHAQRVVVCAGCSTIL---CQPTGGR 127
+ + V C G + +L +PT GR
Sbjct: 777 TDDKNVYYCVGTAYVLPEENEPTKGR 802
>At2g44870.1 68415.m05586 expressed protein
Length = 248
Score = 30.3 bits (65), Expect = 0.41
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 252 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 133
N++ + +CP C + + +++ C GC I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 556
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 205 CNLVTARALNIHEIRVRMWH*PLKL 279
C++ A LNIH++ +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 270 RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 148
R VP +S V+CP C+K+ A C GC +IL
Sbjct: 55 RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 270 RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 148
R VP +S V+CP C+K+ A C GC +IL
Sbjct: 8 RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47
>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
to wall-associated kinase 4 GI:3355308 from [Arabidopsis
thaliana]; isoform contains non-consensus AT-acceptor
splice site.
Length = 714
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 359 GCALKL*PCRSQLICCILPLRRRGGNISLSG*CHILTLISWMLSALAVTRLQQF 198
GC K+ R Q+I + L GGN + G C + L + S VT +QF
Sbjct: 145 GCQAKIPADRPQVIG--VDLESSGGNTTQGGNCKVAFLTNETYSPANVTEPEQF 196
>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 276 LKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 145
++ + P P+ D+ P KI FS + V GC +LC
Sbjct: 117 MEEMKPRPSCIISDLLLPYTSKIARKFSIPKIVFHGTGCFNLLC 160
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 98 LKEHPSVNLARPPVG*QRIVEHPAQTTTL 184
L +HP+V RPP G R+ P TT+
Sbjct: 751 LADHPAVKYGRPP-GALRVPRDPLDATTV 778
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 309 PSPASERRKHKLKRLVPHPNSYFMDV 232
PSPASE + KL + P +YF D+
Sbjct: 289 PSPASECQTDKLDNIDPDGLTYFEDL 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,754,100
Number of Sequences: 28952
Number of extensions: 138467
Number of successful extensions: 341
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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