Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20r
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412...    29   2.9  
07_03_0458 + 18406844-18408877                                         28   6.7  

>01_03_0025 +
           11739930-11740493,11740820-11741020,11741143-11741235,
           11741355-11742125
          Length = 542

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 546 SQPAQAALS*LTVKMIYQSSDKSHSTYSLKMAPLINP 656
           S PA A+      K +++ +DK   TYS +++P + P
Sbjct: 241 SDPAYASRLVARAKRVFEFADKHRGTYSTRLSPYVCP 277


>07_03_0458 + 18406844-18408877
          Length = 677

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 252 KSVLYLLRAIHK----HVTIYEFIKIKQSLLVQEMTNVLFLYPLNQALTLKHYN 401
           KS + + RAI K    H+    FI IK S+   E+   +FLY + +   ++H N
Sbjct: 379 KSSVLIQRAIGKICMGHLKNIRFIVIKMSVEADEIWKEMFLYEMIKQSRIEHCN 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,468
Number of Sequences: 37544
Number of extensions: 211862
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)