Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20f
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.13 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.6  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 79  VLNRHPPEKMSITINKATSSTASNPS 2
           +L +  P  +SI  N +TSS+AS+PS
Sbjct: 150 ILTKTSPTPVSINNNTSTSSSASSPS 175


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 208 IRKINNMRKYARTRIYFYY 152
           IR +   +K  +TR YF Y
Sbjct: 38  IRALGKSKKEFKTRTYFIY 56


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 208 IRKINNMRKYARTRIYFYY 152
           IR +   +K  +TR YF Y
Sbjct: 271 IRALGKSKKEFKTRTYFIY 289


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 208 IRKINNMRKYARTRIYFYY 152
           IR +   +K  +TR YF Y
Sbjct: 271 IRALGKSKKEFKTRTYFIY 289


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 570 VTVDKSGPYIPGKVNNVPS 626
           VT   SG  + G  NNVPS
Sbjct: 61  VTTLASGSSLNGLTNNVPS 79


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 583 LSTVTVFFNLAPCLIE 536
           LS VT+FFN A   +E
Sbjct: 65  LSIVTIFFNFATKKLE 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,433
Number of Sequences: 336
Number of extensions: 2767
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)