Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20f
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    40   2e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    40   4e-04
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   4.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = +3

Query: 516  DRNALLSSIRQGAKLKKTVTVDKSGPYIPGKVNNVPSG 629
            DR+ALL  I  G +LKKTVT DKS P I G+V +   G
Sbjct: 1748 DRSALLQQIHTGTRLKKTVTTDKSKP-IAGRVLDASDG 1784


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 516 DRNALLSSIRQGAKLKKTVTVDKSGPYIPGKV 611
           DR+ALL+SI++G KLKK  T D+S P + G V
Sbjct: 27  DRSALLNSIQKGKKLKKATTNDRSAPVVGGGV 58


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 314 KRASAYTTARDDNTPYTITHFGAIHDTLLKSLKNLDPKD 198
           ++++A    +DD +P TI  FGA    ++  LK+  P D
Sbjct: 31  EKSAAGALTKDDKSPVTIGDFGA-QAIVISMLKDAFPND 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,761
Number of Sequences: 5004
Number of extensions: 41309
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)