Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20f
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    28   5.5  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   7.2  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    28   7.2  

>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 601 GMYGPLLSTVTVFFNLAPCLIELRSAFL 518
           G+YGPL+S ++V   LA CLI + +  L
Sbjct: 531 GVYGPLISAISV-IQLAACLIVILALIL 557


>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
            3363820-3364098,3364189-3364386,3364475-3365110,
            3365209-3365463,3365579-3365685,3365770-3369566,
            3369677-3370166,3370918-3371308,3371481-3371573,
            3371687-3371810,3372544-3372791
          Length = 2380

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 281  DNTPYTITHFGAIHDTLLK-SLKNLDPKD**YEEVR 177
            DNTP+     G  HD L+K ++K   P+D  +E+ R
Sbjct: 2290 DNTPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHR 2325


>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
            3645328-3645525,3645614-3646249,3646352-3646606,
            3646718-3646824,3646909-3650705,3650816-3651305,
            3652043-3652433,3652621-3652713,3652818-3652941,
            3653871-3654118
          Length = 2350

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 281  DNTPYTITHFGAIHDTLLK-SLKNLDPKD**YEEVR 177
            DNTP+     G  HD L+K ++K   P+D  +E+ R
Sbjct: 2290 DNTPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHR 2325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,887
Number of Sequences: 37544
Number of extensions: 259317
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)