Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20f
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     40   0.002
SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)                29   2.4  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 29   4.2  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   4.2  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              27   9.8  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   27   9.8  
SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)                   27   9.8  

>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 516 DRNALLSSIRQGAKLKKTVTVDKSGPYIPGKVNNVPSGTVA 638
           +R ALLS I +GA+LKKTVT D+S P +  +  +   G ++
Sbjct: 29  NRGALLSDIHKGARLKKTVTNDRSAPVVANEKKSSSGGNLS 69


>SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)
          Length = 677

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 115 IGFEFIYLSVNFVLNRHPPEKMSITI--NKAT--SSTASNPS 2
           IG +    S N V  RHPP+ + + I  N+AT  +ST S+PS
Sbjct: 137 IGMKHFDSSSNGVSQRHPPQDIEVEIETNRATYGTSTPSSPS 178


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 115 IGFEFIYLSVNFVLNRHPPEKMSITINKATSSTASNP 5
           +G  F YL++  VL+RH  +  S ++N   S + SNP
Sbjct: 191 LGTSFTYLNIYRVLHRHQLQIQSQSLNVFGSHSNSNP 227


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 296  CTRMLALVCQLVFCIQSVVATRCKY*IEWHFW*QCTSWCGNGSET 430
            C R L    ++V C  S      KY   W  W  CT  CG G ET
Sbjct: 996  CER-LGKPLEVVECFNSECPVHGKY-TPWTGWSSCTKTCGFGIET 1038


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 562 KRP*QWTKVDHTYQGK 609
           K P  WT +DH YQGK
Sbjct: 160 KHPIFWTLIDHCYQGK 175


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 481 CSEDLKKAVEPT--TEMRF*VLLGRALS*KRP*QWTKVDHT 597
           C E+++  V+PT  TE+ +  +  R     RP QW KVD T
Sbjct: 794 CEEEIQATVKPTVETELSWDEMFERL---DRPLQWEKVDDT 831


>SB_53102| Best HMM Match : CUB (HMM E-Value=3.3e-40)
          Length = 644

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 347 VVATRCKY*IEWHFW*QCTSWCGNGSE 427
           V ++   Y  EW  W  C+  CG GS+
Sbjct: 210 VTSSSTSYWAEWASWSDCSRECGGGSQ 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,316
Number of Sequences: 59808
Number of extensions: 311147
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)