Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20f
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    39   0.003
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical ...    29   3.7  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +3

Query: 519 RNALLSSIRQGAKLKKTVTVDKSGPYIPGKV 611
           RNALL  I +G KLKKTVT D+S P + GKV
Sbjct: 29  RNALLGDIHKGLKLKKTVTNDRSAPSV-GKV 58


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +3

Query: 519 RNALLSSIRQGAKLKKTVTVDKSGPYIPGKV 611
           RNALL  I +G KLKKTVT D+S P + GKV
Sbjct: 29  RNALLGDIHKGLKLKKTVTNDRSAPSV-GKV 58


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 516 DRNALLSSIRQGAKLKKTVTVDKSGPYI 599
           DR   L  I+ G KLKKT T DKSG ++
Sbjct: 152 DRGEFLKGIQGGFKLKKTTTNDKSGLFV 179


>AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical
           protein T24C4.8 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 275 CCHHVRLCTRMLALVCQLVFCIQSV 349
           CCH +R C   + L+C ++  ++ +
Sbjct: 85  CCHSIRHCFNSICLICSIIAVLEII 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,613
Number of Sequences: 27780
Number of extensions: 238251
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)