Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i20f
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27410.1 68418.m03272 aminotransferase class IV family protei...    31   0.49 
At1g63600.1 68414.m07189 protein kinase-related low similarity t...    28   6.1  

>At5g27410.1 68418.m03272 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 559

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 610 TFPGMYGPLLSTVTVFFNLAPCLIELRSAFLSSA-PPPFLDPP 485
           TFP M+  LL      +N+  C ++ +S+ LSS  PPP L  P
Sbjct: 212 TFPLMHYDLLEQCLPLYNILRCHMKHKSSLLSSTLPPPSLPVP 254


>At1g63600.1 68414.m07189 protein kinase-related low similarity to
           receptor-like protein kinase 5 [Arabidopsis thaliana]
           GI:13506747; contains Pfam profile: PF01657 Domain of
           unknown function DUF26
          Length = 302

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 547 CLIELRSAFLSSAPPPFLDPP 485
           CL+   +  LSS PPP+  PP
Sbjct: 244 CLLRYEATALSSPPPPYPSPP 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,854
Number of Sequences: 28952
Number of extensions: 212180
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)