Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i17r
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    47   1e-07
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    47   1e-07
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.5  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
 Frame = -1

Query: 528 VSLPKGYETNLGANGA--QLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTE 355
           ++L K   T +G  G    +SGG+K+R+  A  ++ +P+L+  DE TS LD+     V +
Sbjct: 201 LALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQ 260

Query: 354 AL-EKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVS 217
            L E A  G+T I   H+ S    +++  + DK  ++  G  A L S
Sbjct: 261 VLKEMAMTGKTVICTIHQPS----SEVYSMFDKLLLMSEGRTAFLGS 303


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
 Frame = -1

Query: 528 VSLPKGYETNLGANGA--QLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTE 355
           ++L K   T +G  G    +SGG+K+R+  A  ++ +P+L+  DE TS LD+     V +
Sbjct: 201 LALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQ 260

Query: 354 AL-EKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVS 217
            L E A  G+T I   H+ S    +++  + DK  ++  G  A L S
Sbjct: 261 VLKEMAMTGKTVICTIHQPS----SEVYSMFDKLLLMSEGRTAFLGS 303


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 367 GRDRSFGEGCQGPHLHHYC 311
           G++R   EGC  P   +YC
Sbjct: 66  GKNRGVTEGCDYPWRSNYC 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,025
Number of Sequences: 336
Number of extensions: 3257
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)