Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i17r
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 184 1e-47
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 169 3e-43
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 157 1e-39
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 147 2e-36
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 116 3e-27
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 113 2e-26
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 111 1e-25
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 104 1e-23
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 101 1e-22
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 46 5e-06
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 45 1e-05
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 45 1e-05
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 39 6e-04
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 39 6e-04
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 39 8e-04
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 30 0.38
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 30 0.38
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 0.67
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.5
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 8.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.2
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 8.2
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 184 bits (448), Expect = 1e-47
Identities = 90/167 (53%), Positives = 118/167 (70%)
Frame = -1
Query: 675 RRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIVSLPKGYETNL 496
R+Q+ +V QEP L ++ ENI G + + V+ E++ A K ANIH FI+ LP GY T
Sbjct: 1194 RKQIALVSQEPTLYQGTVRENIVLGAS-KDVSEEEMIEACKKANIHEFILGLPNGYNTLC 1252
Query: 495 GANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCIT 316
G G+ LSGGQKQR+ IARALIR+P++LLLDEATSALD+ SE+ V EAL A++GRT +
Sbjct: 1253 GQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVA 1312
Query: 315 IAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKGHYWRMCRGQNM 175
IAHRLS+++DAD I V D G I E GTHAELV +G Y+ + Q +
Sbjct: 1313 IAHRLSSIQDADCIFVFDGGVIAEAGTHAELVKQRGRYYELVVEQGL 1359
Score = 176 bits (429), Expect = 2e-45
Identities = 92/190 (48%), Positives = 132/190 (69%), Gaps = 7/190 (3%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYG-DNNRKVTMHE------IVA 562
LD +D+R+ L + LR Q+ +VQQEPVL ++ ENI YG + K T+ + +
Sbjct: 481 LDGKDLRT-LNVASLRNQISLVQQEPVLFATTVFENITYGLPDTIKGTLSKEELERRVYD 539
Query: 561 AAKAANIHSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALD 382
AAK AN + FI++LP+ + TN+G G +SGGQKQR+ IARA+I P++LLLDEATSALD
Sbjct: 540 AAKLANAYDFIMTLPEQFSTNVGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALD 599
Query: 381 ASSERAVTEALEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKGHY 202
+ SE V +AL+ A++ RT I IAHRLST+++AD I V++ GKIVE+G+H EL+ + G Y
Sbjct: 600 SKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAY 659
Query: 201 WRMCRGQNMA 172
R+ Q ++
Sbjct: 660 ARLVEAQKLS 669
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 169 bits (411), Expect = 3e-43
Identities = 85/171 (49%), Positives = 116/171 (67%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANI 541
+D++DIR+ +T+ LR +GVV Q+ L + ++ NI Y + T EI AAAKAA I
Sbjct: 643 IDDQDIRN-VTLSSLRSSIGVVPQDSTLFNDTILYNIKYAKPS--ATNEEIYAAAKAAQI 699
Query: 540 HSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAV 361
H I+ P GY + +G G +LSGG+KQRV +ARA+++ P ++LLDEATSALD ++ER +
Sbjct: 700 HDRILQFPDGYNSRVGERGLKLSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQI 759
Query: 360 TEALEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKG 208
AL + A GRT I IAHRLST+ +ADLI I G+IVE GTH EL+ G
Sbjct: 760 QAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRDG 810
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 157 bits (382), Expect = 1e-39
Identities = 78/182 (42%), Positives = 119/182 (65%), Gaps = 2/182 (1%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANI 541
+DN+ + +T+ LR+ +GVV Q+ L + ++ NI YG N K + EIV AAK A I
Sbjct: 502 IDNQRL-DQITLNSLRKAIGVVPQDTPLFNDTILYNIGYG--NPKASNDEIVEAAKKAKI 558
Query: 540 HSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAV 361
H I S P+GY+T +G G +SGG+KQR+ ++R L+++P +L DEATSALD ++ERA+
Sbjct: 559 HDIIESFPEGYQTKVGERGLMISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERAL 618
Query: 360 TEALEKAAKG--RTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKGHYWRMCR 187
+ KG +T + IAHRL T+KD D+I V++KG++VE+G+H +L++ Y M
Sbjct: 619 LRNINDLIKGSHKTSVFIAHRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAKNSVYTSMWH 678
Query: 186 GQ 181
Q
Sbjct: 679 SQ 680
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 147 bits (356), Expect = 2e-36
Identities = 81/181 (44%), Positives = 115/181 (63%), Gaps = 2/181 (1%)
Frame = -1
Query: 717 DNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIH 538
D DI S + + R G+V QEPVL ++ ENIAYG +N + EI AAK AN
Sbjct: 544 DGVDI-STYNVHQWRSHFGLVGQEPVLFSGTIGENIAYGKSN--ASQEEIEDAAKRANC- 599
Query: 537 SFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVT 358
SF++S P+ + T +G G QLSGGQKQR+ IARAL+R+P L+LDEATSALD +E V
Sbjct: 600 SFVLSFPEKWSTQVGTRGLQLSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVD 659
Query: 357 EALEKAAKGR--TCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKGHYWRMCRG 184
+ ++ R T ITIAH+L+T++ AD I V+ GK++E+G+ L +++++ R
Sbjct: 660 KTIQSLMHNRSMTTITIAHKLATIRRADQIIVVGDGKVLEQGSFERLSRPGTNFYKLMRW 719
Query: 183 Q 181
Q
Sbjct: 720 Q 720
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 116 bits (279), Expect = 3e-27
Identities = 61/170 (35%), Positives = 102/170 (60%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANI 541
+DN DI + + LR +L ++ QE + + ++ EN+ D N ++T +I + A++
Sbjct: 1286 IDNEDI-TKFGLYDLRSRLSIIPQESQIFEGNIRENL---DPNHRLTDKKIWEVLEIASL 1341
Query: 540 HSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAV 361
+ I L G + + GA S GQ+Q +C+AR L+ S R+LLLDEAT+++ A ++ V
Sbjct: 1342 KNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASVHAETDAIV 1401
Query: 360 TEALEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMK 211
+ + K K RT +T+AHR++TV D+D I V+D GK+VE +L+ K
Sbjct: 1402 QQTIRKRFKDRTILTVAHRINTVMDSDRILVLDHGKVVEFDATKKLLENK 1451
Score = 73.3 bits (172), Expect = 3e-14
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Frame = -1
Query: 666 LGVVQQEPVLLDRSLAENIAYGDN-NRKVTMHEIVAAAKAANIHSFIVSLPKGYETNLGA 490
L Q+P + D ++ ENI +G + ++ I A + F +G +T +G
Sbjct: 644 LAYAAQQPWIFDATIRENILFGSEFDPELYEKTIHACCLKRDFEIFT----EGDQTEVGQ 699
Query: 489 NGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEAL---EKAAKGRTCI 319
GA LSGGQK R+ +ARA+ + LLD+ S++D R + + L E + +
Sbjct: 700 KGASLSGGQKSRISLARAIYSQADIYLLDDVLSSVDQHVSRDLIKNLFGPEGFLRTHCVV 759
Query: 318 TIAHRLSTVKDADLICVIDKGKIVERGTHAEL 223
+ L+ +K+AD I ++ GKIVE+G + L
Sbjct: 760 LTTNSLNVLKEADSIYILSNGKIVEKGNYEHL 791
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 113 bits (272), Expect = 2e-26
Identities = 64/170 (37%), Positives = 102/170 (60%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANI 541
LD+ +I S + + LR +L ++ QE + ++ EN+ D N T EI A +AA++
Sbjct: 1284 LDDINITS-IGLHDLRSRLAIIPQENQAFEGTIRENL---DPNANATDEEIWHALEAASL 1339
Query: 540 HSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAV 361
FI +L G + + GA LS GQ+Q +C+ RAL+ R+LLLDEAT+A+D ++ V
Sbjct: 1340 KQFIQTLDGGLYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIV 1399
Query: 360 TEALEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMK 211
+ + RT +TIAHR++TV D++ I V+D GK+VE + +L+ K
Sbjct: 1400 QRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGKVVEFDSTKKLLENK 1449
Score = 68.9 bits (161), Expect = 7e-13
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Frame = -1
Query: 651 QEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIVSLPKGYETNLGANGAQLS 472
Q+P +L+ ++ ENI +G + + A + F + L G +T +G G LS
Sbjct: 651 QQPWILNATIQENILFGLELDPEFYEKTIRAC--CLLRDFEI-LADGDQTEVGEKGISLS 707
Query: 471 GGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEAL---EKAAKGRTCITIAHRL 301
GGQK R+ +ARA+ + LLD+ SA+D R + L + + R I + L
Sbjct: 708 GGQKARISLARAVYSRSDIYLLDDILSAVDQHVNRDLVRNLLGSKGLLRSRCVILSTNSL 767
Query: 300 STVKDADLICVIDKGKIVERGTHAELVS 217
+ +K+A +I ++ GKI+E G+ +L S
Sbjct: 768 TVLKEASMIYMLRNGKIIESGSFTQLSS 795
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 111 bits (267), Expect = 1e-25
Identities = 59/192 (30%), Positives = 112/192 (58%), Gaps = 9/192 (4%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENI----AYGDNN-----RKVTMHEI 568
+D DI S L + LR+++ ++ Q+PVL+ ++ N+ YGD + + +
Sbjct: 1240 VDGIDINS-LDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESL 1298
Query: 567 VAAAKAANIHSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSA 388
V A+ ++ +F + L +T + + G S GQ+Q + +ARAL+R R+++LDE+T++
Sbjct: 1299 VQASNKNSLDAFAIHL----DTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTAS 1354
Query: 387 LDASSERAVTEALEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKG 208
+D +++R + + L A K T + IAHR+ T+ D D + V+D GK VE G+ L + +
Sbjct: 1355 VDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSLYTQRR 1414
Query: 207 HYWRMCRGQNMA 172
+W+MC+ +++
Sbjct: 1415 AFWKMCKESHIS 1426
Score = 72.1 bits (169), Expect = 7e-14
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Frame = -1
Query: 705 IRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIV 526
I +T P + +++ V Q L + ++ NI +G+ + +I+ KA + S +
Sbjct: 634 ISGKMTTPSISQRIAYVPQAAWLRNGTIRSNILFGEPYDEERYFQII---KACCLDSDLN 690
Query: 525 SLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEA-- 352
S+ G T + +NG+ LSGGQKQRV +ARAL + + + D+ SALD S+ R + E+
Sbjct: 691 SMNDGDLTYIHSNGSSLSGGQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCF 750
Query: 351 LEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVS 217
L + +T I H +S L I + IV + + A+LVS
Sbjct: 751 LSTLLQHKTIILFTHNVS------LCLPIAENVIVLKNSTAQLVS 789
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 104 bits (249), Expect = 1e-23
Identities = 55/147 (37%), Positives = 88/147 (59%)
Frame = -1
Query: 660 VVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIVSLPKGYETNLGANGA 481
+V Q+PV+ D ++ ENI + N + E V + A + F ++ + Y+T A
Sbjct: 514 LVCQQPVIFDMTIRENIIMRNENASESDFEEVC--RLALVDEFALTFDQSYDTP--CKEA 569
Query: 480 QLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCITIAHRL 301
LSGGQ+QR+ +ARAL+R +L+LDE TSALD ++ V +A+ KG+T + I H +
Sbjct: 570 SLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDM 629
Query: 300 STVKDADLICVIDKGKIVERGTHAELV 220
S + + +L+ VIDKG +++R ELV
Sbjct: 630 SQINNDELVLVIDKGHLIQRCARKELV 656
Score = 103 bits (246), Expect = 3e-23
Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 1/167 (0%)
Frame = -1
Query: 678 LRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIVSLPKGYETN 499
L +++ +V Q+P LL ++ E++ YG + ++ ++ A + I +LP G +T
Sbjct: 1172 LLKKVAIVDQKPHLLGSTILESLLYGVDR---DINSVMDALDKTYMTEVIQNLPNGLDTP 1228
Query: 498 LGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCI 319
L SGGQ QR+ ARAL+R+PRLL+LDE TSALD+ S + + ++ + T +
Sbjct: 1229 LLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQNLS--CTVL 1286
Query: 318 TIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKGHYWRMC-RGQ 181
I H+ S +K AD I V+D G + E G+ EL++ H+W++ RG+
Sbjct: 1287 IITHQPSLMKLADRIIVMDSGIVKESGSFDELMNRHTHFWKLIHRGE 1333
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 101 bits (241), Expect = 1e-22
Identities = 54/186 (29%), Positives = 105/186 (56%), Gaps = 4/186 (2%)
Frame = -1
Query: 720 LDNRDIRSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANI 541
++ R+ +S + + LR+++ + Q+P+L ++ N+ D ++E + + A+++
Sbjct: 1272 INGRETQS-VNLNALRQRISFIPQDPILFSGTVRSNLDPFDELEDNFLNEALKTSGASSM 1330
Query: 540 HSFIVSLPKGY----ETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASS 373
K +T++ + G+ S GQKQ + +ARA++R ++++LDE T+++D +
Sbjct: 1331 IMAHTDDQKPIHITLDTHVASEGSNFSQGQKQVLALARAIVRRSKIIILDECTASVDDAM 1390
Query: 372 ERAVTEALEKAAKGRTCITIAHRLSTVKDADLICVIDKGKIVERGTHAELVSMKGHYWRM 193
++ + + L +A T + IAHRL T+ D D + V+DKG +VE G A L GH+ RM
Sbjct: 1391 DQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHNNGHFRRM 1450
Query: 192 CRGQNM 175
C G +
Sbjct: 1451 CDGSGI 1456
Score = 55.2 bits (127), Expect = 9e-09
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Frame = -1
Query: 702 RSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIV-AAAKAANIHSFIV 526
+ + +PR + + V Q P L + ++ +NI + + +++ A ++ SF+
Sbjct: 669 KGSYNLPR-SKGVSYVSQVPWLRNATIRDNILFDYPYIEERYKKVIQACGLLTDLQSFVA 727
Query: 525 SLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALE 346
S T +G G LSGGQKQR+ +ARA+ ++L+D+ SALD + + +
Sbjct: 728 S----DLTEIGEKGVTLSGGQKQRIALARAVYSPTSIVLMDDVFSALDIHTSNWIYKHCF 783
Query: 345 KAA--KGRTCITIAHRLSTVKDADLICVIDK 259
+++ + RT I + H + D+ V K
Sbjct: 784 QSSLMENRTVILVTHNVHLFMDSAAFIVTVK 814
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = -1
Query: 480 QLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCITIAHRL 301
+LSGG + R+ +AR L P L++LDE T+ LD + + E L +G T + H
Sbjct: 420 ELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQ 479
Query: 300 STVKD 286
T+ +
Sbjct: 480 DTLNE 484
Score = 46.0 bits (104), Expect = 5e-06
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = -1
Query: 480 QLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCITIAHRL 301
QLS GQ++RV A + P +LLLDE T+ALD + A+ +AL G IT RL
Sbjct: 712 QLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRL 771
Query: 300 STVKDADLICVIDKGKIVE 244
+ A+ I ++ G + E
Sbjct: 772 ID-QVAEEIWIVQNGTVKE 789
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = -1
Query: 483 AQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCITIAH 307
A LSGG K ++ +ARA+++ +LLLDE T+ LD ++ A EA + K TC+ ++H
Sbjct: 561 ASLSGGWKMKLELARAMLQKADILLLDEPTNHLDVAN-IAWLEAYLTSQKNITCLIVSH 618
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -1
Query: 483 AQLSGGQKQRVCIARALIRSPRLLLLDEATSALD 382
+ LSGGQK +V IA L +P+LL+LDE T+ LD
Sbjct: 909 SSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLD 942
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = -1
Query: 477 LSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCITIAH 307
LSGGQK RV A +++P +L+LDE T+ LD S A+T A+++ G I ++H
Sbjct: 637 LSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGG--VILVSH 691
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = -1
Query: 474 SGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALE 346
SGG + R+ +ARAL P LLLLDE ++ LD S ++E L+
Sbjct: 356 SGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYLQ 398
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -1
Query: 477 LSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEAL 349
LS GQ +R +A L++ P+LLLLDE + LD +S ++ L
Sbjct: 149 LSNGQSRRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLL 191
Score = 33.5 bits (73), Expect = 0.031
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -1
Query: 483 AQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEAL-EKAAKGRTCITIAH 307
+ +S G ++ + RA+++ PRL++LDE +D L EK + + + I+H
Sbjct: 404 SSISVGMQRFILFCRAIVKQPRLVVLDEPFQGVDTKYVHMAHNYLNEKLSPSQAMVIISH 463
Query: 306 RLSTVKD-ADLICVIDKGKIV 247
+ + ID GK+V
Sbjct: 464 YEDELPACVNRRAHIDNGKLV 484
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = -1
Query: 573 EIVAAAKAANIHSFIVSLPKGYETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEAT 394
EIV A K + ++++P G LSGG K ++ + RA+ ++P +LLLDE T
Sbjct: 527 EIVKALKENSFTDELINMPIG----------SLSGGWKMKLALTRAMFKNPDILLLDEPT 576
Query: 393 SALD 382
+ LD
Sbjct: 577 NHLD 580
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -1
Query: 477 LSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCIT 316
LSGGQK ++ +A P +++LDE T+ LD S A+++ L+ G +T
Sbjct: 904 LSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNFGGGVVLVT 957
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1
Query: 477 LSGGQKQRVCIARALIRSPRLLLLDEATSALD 382
+SGG + RV ++RAL P LLLLDE T+ LD
Sbjct: 221 MSGGWRMRVALSRALFIKPSLLLLDEPTNHLD 252
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 483 AQLSGGQKQRVCIARAL----IRSPRLLLLDEATSALDASSERAVTEALEKAAKGRTCIT 316
A+LSGGQ+ V +A + + + +LDE +ALD S + + ++ KG I
Sbjct: 1084 AELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGRLIKTKFKGSQFII 1143
Query: 315 IA 310
++
Sbjct: 1144 VS 1145
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 477 LSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEK 343
LSGG+ QRV I AL + L+DE ++ LD+ ++ + +
Sbjct: 456 LSGGELQRVAICLALGMPADVYLIDEPSAYLDSEQRIIASKVIRR 500
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.1 bits (62), Expect = 0.67
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = -1
Query: 480 QLSGGQKQRVCIARALIRSPR-----LLLLDEATSALDASSERAVTEALEKAAKGRTCIT 316
QLSGGQK +C + R +LDE + LDA A+ +++ +K I
Sbjct: 1096 QLSGGQKS-LCALTLIFAIQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMSKTSQFIC 1154
Query: 315 IAHRLSTVKDAD 280
R VK AD
Sbjct: 1155 TTFRPEMVKVAD 1166
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 504 TNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALEKAAKGRT 325
+NL + G R+CI + RS E + LD E + + ALEK K +
Sbjct: 389 SNLSNARVAILEGYSNRLCIWDRIERSKT----GEMNNVLDEKEEISASSALEKLIKNNS 444
Query: 324 CI 319
C+
Sbjct: 445 CL 446
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 199 AHV*RPKYGLIIFPIMPFILVFSCFCFPILRYSYFKIIRFFLCHANFF 56
+H R + I P ++ F CF F +S+F + F H NFF
Sbjct: 86 SHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFL-FTSLHFNFF 132
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 169 LSHILASTHAPVMSLHADQFSMSSTLNDFTFINNADQVSVFNCREAVSNSDASAALGSL 345
L+ L+ST + + + D +SS N+FT N+ + + + + NSDAS+ + +L
Sbjct: 245 LTETLSSTISTLSNDSLD--GLSSQKNEFTGFNSNSEWIPNDTVDYICNSDASSVVSNL 301
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.2
Identities = 21/78 (26%), Positives = 30/78 (38%)
Frame = -1
Query: 702 RSALTIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIVS 523
R+A P R + P + S E+I NN+K AAA +A HS +
Sbjct: 156 RTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSLYAAAAASAARHSMSAA 215
Query: 522 LPKGYETNLGANGAQLSG 469
T +NG + G
Sbjct: 216 YASFTGTVYDSNGNVIKG 233
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.2
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = -1
Query: 690 TIPRLRRQLGVVQQEPVLLDRSLAENIAYGDNNRKVTMHEIVAAAKAANIHSFIVSLPKG 511
+IP+ ++ +VQQ P +L+ ++ + I GD +A A N +F+ L +G
Sbjct: 252 SIPQFQQLRQIVQQNPQMLE-TILQQIGQGD--------PALAQAITQNPEAFLQLLAEG 302
Query: 510 Y--ETNLGANGAQLSGGQKQRVCIARALIRSPRLLLLDEATSALDASSERAVTEALE 346
E+ L + G Q+ Q++ I R ++ +A A D + E A E
Sbjct: 303 AEGESALPSGGIQIQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFE 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,209
Number of Sequences: 5004
Number of extensions: 53435
Number of successful extensions: 164
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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