Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i17f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 36 0.007
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 30 0.33
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.3
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 27 3.0
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 27 3.0
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 4.0
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 4.0
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 5.3
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 25 9.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.3
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 25 9.3
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 403 FISIGVSLVFCVLSFSLISWSALRQITR-IRTLFLRSVLRQDMSWYDTDSEFNLASKMSE 579
FI I + + C +++ A +I R IR +L ++L Q++ ++D + ++++
Sbjct: 146 FIYIAIGVFGCSYIYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITT 205
Query: 580 NLMSIKEGMGEKLAVV 627
+ I++G+GEK+ +V
Sbjct: 206 DTNFIQDGLGEKVGLV 221
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 456 QLERFTPDNENKDVVPEVCTSSRHVLVRH*FRIQLSVEDVRKLDEH 593
QL R P KD E+ + L+RH +++V+D+++ +++
Sbjct: 135 QLHRIDPKVPRKDQFSEIAAMKKEGLIRHVGLSEVTVDDIKEAEQY 180
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 159 AVGNRSRGSLRNDKWSR 209
A R GSLRNDKW+R
Sbjct: 174 AYATRINGSLRNDKWNR 190
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 235 LFGAGCSTRRLHLSFRRLPRERLPT 161
LF G +RLH+ RR P +PT
Sbjct: 256 LFFEGVPIKRLHIHVRRFPISEIPT 280
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 502 LRSVLRQDMSWYDTDSEFNLASKMSENLMSIKEG-MGEKLAV 624
LRS +D WY + + + M E L ++ EG M ++AV
Sbjct: 340 LRSECHRDTGWYRSGRYYKVRDLMREKLFALIEGEMPSEVAV 381
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/100 (18%), Positives = 49/100 (49%)
Frame = +1
Query: 328 RLVNATHEQNMEALIDDAKAMAIGMFISIGVSLVFCVLSFSLISWSALRQITRIRTLFLR 507
+L++ + ++E +++ A+ + I G S+ + ++++ + Q ++TL
Sbjct: 81 KLIDRISDDSVEVVVEATGALR-NLAIEEGYSICMDMYRKNVLAPLQIWQTKIVQTLDEA 139
Query: 508 SVLRQDMSWYDTDSEFNLASKMSENLMSIKEGMGEKLAVV 627
+ + + Y+ S F+ ++EN+ S+ +GE + V
Sbjct: 140 TEGKNVLETYEDRSTFSCLCAIAENISSLLVNLGETTSQV 179
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 325 KRLVNATHEQNMEALID 375
K LVNA HE+NM ++D
Sbjct: 112 KELVNAIHEKNMLCMVD 128
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = -3
Query: 393 GHCFRVIDKSLHILFVRSVNQSFATSESRSQRQVAGKPVMILSPLNERRAQFSYLEQVAA 214
G R ++ L IL + A++ S + R +A P MILS + F+ ++
Sbjct: 178 GDIVRSEEEFLEILAKLEQQEKEASNVSEASR-IATIPPMILSEEEVKSQYFNDQSRLVT 236
Query: 213 HAGSTYHSEDYPESGCQQLQTISVTKDLKEG 121
YH + P+ ++ +I V + + G
Sbjct: 237 DCPKFYHFQSMPDIWNEEQHSIFVQQFILHG 267
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 9.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 355 NMEALIDDAKAMAIGMFISIGVSLVFCVLSFSLISWSALRQITRIRTLFLRSV-LRQDMS 531
N+ L D+ +G+ + G + +S +LI W++L RI + SV L + +
Sbjct: 142 NLPKLQSDSIFKILGLNVPKGWKGIH--ISLNLIKWNSLSSRGRITNIIKGSVPLTNNSN 199
Query: 532 WYDTDSEFNLASKM 573
YD +S + SKM
Sbjct: 200 GYD-ESSLAIYSKM 212
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1
Query: 599 SLMLIKFSDIFDAKLNSESV-SYQDMS*RSTDLRNNVLI 486
SL++ KFS FD+++++E V + D+S ++ D ++L+
Sbjct: 492 SLLIQKFSRKFDSRVSTELVRTLADISTKANDRDFSILV 530
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 20 AGSGPIEITAQFAS*KWQIRKRNRRMKKTSRRWCP-SFKSFV--TEIVWSCWQPLSG*SS 190
AG GP+E+ + FA+ + + RR K ++ P S + V T ++W W +G S+
Sbjct: 203 AGGGPVEVGSGFAALAYTV-CLGRRSKFVEEQFRPHSVLNVVLGTSLLWFGWLGFNGGSA 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,841
Number of Sequences: 5004
Number of extensions: 51680
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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