Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i17f
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 54 7e-08
SB_51337| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25) 31 0.80
SB_27802| Best HMM Match : Filament (HMM E-Value=0.2) 31 1.1
SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11) 30 1.8
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_57812| Best HMM Match : CBF (HMM E-Value=2.8) 29 2.4
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 29 3.2
SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 29 4.2
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_60| Best HMM Match : ABC_membrane (HMM E-Value=0.00037) 28 5.6
SB_42941| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=1.3) 28 7.4
SB_28273| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.63) 27 9.8
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/75 (30%), Positives = 49/75 (65%)
Frame = +1
Query: 400 MFISIGVSLVFCVLSFSLISWSALRQITRIRTLFLRSVLRQDMSWYDTDSEFNLASKMSE 579
+++++G +L L + +++A+ Q +I+ F R+VLRQD+ W+DT L ++++E
Sbjct: 343 VYLAVG-TLFVAYLQSGMFTYTAVLQAKKIQCNFFRAVLRQDIGWFDTYDLGELNNRLTE 401
Query: 580 NLMSIKEGMGEKLAV 624
++ +KEG+G K+ +
Sbjct: 402 DVRKVKEGLGHKVGL 416
>SB_51337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/54 (37%), Positives = 37/54 (68%)
Frame = +1
Query: 466 ALRQITRIRTLFLRSVLRQDMSWYDTDSEFNLASKMSENLMSIKEGMGEKLAVV 627
A+RQ RIR F ++V+RQD+ W+DT L ++++E++ + +G+G K+ +V
Sbjct: 150 AVRQAKRIRCNFFKAVMRQDIGWFDTYDAGELNNRLTEDISKVVDGLGSKVGLV 203
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 115 LVSFFQIFRYGNCLELLATALGVVFGMISGAGVCCNLLQIGELSTAFVE 261
+VS Q+FRY + ++ + AL M G + GEL +FV+
Sbjct: 85 MVSLGQLFRYADGVDRILLALAFFGAMAHGVATPLQFIIFGELIESFVK 133
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +1
Query: 412 IGVSLVFCVLSFSLISWSALRQITRIRTLFLRSVLRQDMSWYDTDSEFNLASKMSENLMS 591
+GV+L+ V+ SL S L R+ + SVL+ + ++DT+ + ++ S+++
Sbjct: 812 VGVALLLSVIRASLFFSSVLNSSQRLHNEMVESVLKAPVLFFDTNPAGRIMNRFSKDIGC 871
Query: 592 IKEGMGEKLAVVSNLV 639
+ E + + L L+
Sbjct: 872 MDELLPDVLLDALQLI 887
>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
Length = 2146
Score = 31.1 bits (67), Expect = 0.80
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 5/166 (3%)
Frame = +1
Query: 28 RTY*NNCAVRVLKMAXXXXXXXXXXXITTLVSFFQIFRYGNCLELLATALGVVFGMISG- 204
R + N C V + + T ++F+ ++GN LE++ +L V +++
Sbjct: 1817 RVFHNVCKVIFMLFVIICLVLEIKKAVGTRCTYFR--KFGNWLEIILLSLCVAAIVMNSY 1874
Query: 205 ----AGVCCNLLQIGELSTAFVERTKYHDRLSSYLPLTATFGGGKRLVNATHEQNMEALI 372
AG +Q T + + L Y+ TF L+ AL+
Sbjct: 1875 VEYFAGKYVKDIQANPYKTWNTDELVFWSDLEIYILGFITFILTVYLIKLIRFNRHVALM 1934
Query: 373 DDAKAMAIGMFISIGVSLVFCVLSFSLISWSALRQITRIRTLFLRS 510
+ A G+ IS V + +L+FS++S A + + LRS
Sbjct: 1935 LRSMGSASGLLISFSVVYIVAILAFSMLSCLAFGSSVQAYSNLLRS 1980
>SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 528
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 508 SVLRQDMSWYDTDSEFNLASKMSENLMSIKEGMGEKLAVVSNL 636
S + + MS YD + FNLA+ E LM ++ + EK A ++ L
Sbjct: 174 SAMAEKMS-YDQINSFNLAANCDEKLMKLEREIREKTARITEL 215
>SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)
Length = 541
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 247 TAFVERTKYHDRLSSYLPLTATFGGGKRLVNATHEQNMEALIDDAKAMAIGMFISIGVSL 426
T FV K+H +YL L A F G K + ++ A+ID+ A+A+ + S
Sbjct: 101 TWFVREQKHH---INYLELLAVFLGLKTYCKDLRDAHVRAMIDNTTAIAVLNHMGTSHSP 157
Query: 427 VFCVLSFSLISWSALRQI 480
+L ++ W R I
Sbjct: 158 ELNLLGKTIWEWCITRGI 175
>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 304 TATFGGGKRLVNATHEQNMEALIDD-AKAMAIGMFISIGVSLVFCVLSFSLISWSALRQI 480
+A GGG RLVN N ++DD A + + V+L F + W +Q+
Sbjct: 237 SAIHGGGLRLVNTRDGTNTLIILDDCAASKDVKRRSEKLVNLAFSARHMGISVWVITQQL 296
Query: 481 TRIRTLFLRSV 513
T I F ++
Sbjct: 297 TSITKPFRENI 307
>SB_57812| Best HMM Match : CBF (HMM E-Value=2.8)
Length = 262
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 502 LRSVLRQDMSWYDTDSEFNLASKMSENLMSIKEGMGEKL 618
++SVL D +Y T + +NLA + N+M E + K+
Sbjct: 9 VKSVLVNDFKFYFTVNRYNLAMMVRSNVMKAVESLARKV 47
>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 712
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 217 CNLLQIGELSTAFVERTKYHDRLSSYLPLTATFGGGKRLVNATHE--QNMEALIDDAKAM 390
C +I + ++ K H ++ T + NAT + + D+K+
Sbjct: 26 CAFYEIVYQNFSYSNCPKQHFQILQLPEKKKTLRSKMNISNATGNPSRGCSTSVPDSKS- 84
Query: 391 AIGMFISIGVSLVFCVLSFSLISWSALRQITRIRTLF 501
A+G+ ++ G+ L+F V+ + + W A R T F
Sbjct: 85 AVGLSVAFGIVLLFAVVGNAFVIWFARRSTRTKYTAF 121
>SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1284
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 323 PPPKVAVSGK*LESRS*YLVLSTNAVLSSPIWSRLQHTPAPLIIPKTTPRAVANSSKQFP 144
PPP A + + S +++ ST V S PI + TP P + PK++ V + + P
Sbjct: 1205 PPPTTATA----MTGSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESP 1260
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 323 PPPKVAVSGK*LESRS*YLVLSTNAVLSSPIWSRLQHTPAPLIIPKTTPRAVANSSKQFP 144
PPP A + + S +++ ST V S PI + TP P + PK++ V + + P
Sbjct: 579 PPPTTATA----MTGSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESP 634
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 379 AKAMAIGMFIS-IGVSLVFCVLSFSLISWSALRQITRIRTLFLRSVLRQDMSWYDTDSEF 555
A +G++ +G+SL+ SL+ +ALR + ++L+ + ++DT+
Sbjct: 518 ASGSVLGVYAGLVGLSLLTATGMASLLFIAALRSSENLHNAMTTTILKSPILFFDTNPSG 577
Query: 556 NLASKMSENL 585
+ ++ S+++
Sbjct: 578 RIMNRFSKDI 587
>SB_60| Best HMM Match : ABC_membrane (HMM E-Value=0.00037)
Length = 274
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 379 AKAMAIGMFIS-IGVSLVFCVLSFSLISWSALRQITRIRTLFLRSVLRQDMSWYDTDSEF 555
A +G++ +G+SL+ SL+ +ALR + ++L+ + ++DT+
Sbjct: 7 ASGSVLGVYAGLVGLSLLTATGMASLLFIAALRSSENLHNAMTTTILKSPILFFDTNPSG 66
Query: 556 NLASKMSENL 585
+ ++ S+++
Sbjct: 67 RIMNRFSKDI 76
>SB_42941| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=1.3)
Length = 231
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 376 DAKAMAIGMFISIGVSLVFCVLSF--SLISWSALRQITRIRTLFLRSVLRQDMSWYDTDS 549
DA M++GM + IGV+ +F +L S+ + R+ +R+R + + D + D
Sbjct: 170 DAHHMSVGMAVGIGVACLFGILIIIGSVFYYRRFRR-SRLRAAYYNDISMNDPLYEDFGP 228
Query: 550 E 552
E
Sbjct: 229 E 229
>SB_28273| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.63)
Length = 435
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +1
Query: 136 FRYGNCLELLATALGVVFGMISGAGVCCNLLQIGELSTAFVERTKYHDRLSSYLPLTATF 315
FR GN ELL T L + SG L + L+T +D L++ L A
Sbjct: 186 FRAGNAKELLTTPLSSLALPQSGQAPITGSLSLSSLATNTSRTVNVNDLLTTSLSSLALS 245
Query: 316 GGGK 327
G K
Sbjct: 246 GTSK 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,198
Number of Sequences: 59808
Number of extensions: 407699
Number of successful extensions: 1298
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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