Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i16r
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 95 4e-20
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.002
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.003
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.007
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 37 0.015
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.047
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.14
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 34 0.14
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 34 0.14
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.25
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.33
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.44
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.44
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 0.76
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 31 1.3
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016) 30 2.3
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 30 2.3
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 3.1
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 29 5.4
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46) 29 5.4
SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3) 29 5.4
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09) 28 7.1
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 9.4
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 28 9.4
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08) 28 9.4
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 95.5 bits (227), Expect = 4e-20
Identities = 40/82 (48%), Positives = 60/82 (73%)
Frame = -1
Query: 271 REDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 92
+ + IR++NLS E+D+ +L + GP+ +++LAK+K T KGFA+++F R DAA
Sbjct: 177 QHETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAA 236
Query: 91 KAIQSLNGHGYDHLILNVEWSK 26
+AI+ L+G GYDHLILNVEW+K
Sbjct: 237 RAIEVLSGFGYDHLILNVEWAK 258
Score = 52.4 bits (120), Expect(2) = 8e-14
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = -1
Query: 757 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 626
SEV E KIVTEYK D++ K KI+ TY++E R V+K IAKRK
Sbjct: 80 SEVREGENKIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123
Score = 42.3 bits (95), Expect(2) = 8e-14
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 529 SKEESQR--PDDGELDGLKPPSSNVIFKCRTCQGDHLTLYCPFK 404
+KE ++R PD E D LK S I +CR C+GDH T CP+K
Sbjct: 116 AKEIAKRKNPDATEEDPLKKLSGQKIVQCRICKGDHWTTKCPYK 159
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/73 (28%), Positives = 42/73 (57%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
++N+ A E DI +L +G + L++ ++ TG KG+A V ++ +A A+++LNG
Sbjct: 297 VTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNG 356
Query: 67 HGYDHLILNVEWS 29
++V+W+
Sbjct: 357 AEMLGQNISVDWA 369
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/94 (23%), Positives = 43/94 (45%)
Frame = -1
Query: 286 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 107
+P +E T + ++ + + + + ++ + + K +G GF +V +
Sbjct: 38 EPQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNT 97
Query: 106 RADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*K 5
DA KAI LNG + +L V +S+P +N K
Sbjct: 98 TEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTK 131
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ N+ A + I L G V+K+ + + CKGF +V + +A AIQ+LNG
Sbjct: 279 VYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNG 338
Query: 67 HGY 59
Y
Sbjct: 339 FMY 341
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I I L N+ E + +L+ FG + L K+ +TG KG+A+ + AIQ L
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 73 NG 68
NG
Sbjct: 735 NG 736
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = -1
Query: 256 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77
++ + N+ A E + ++ GPV L ++ TG KG+ + +K + A A+++
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 76 LNGHGYDHLILNVEWSKPPQN 14
LNG+ + L V+ + +N
Sbjct: 86 LNGYELNGRALRVDSAASEKN 106
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41
+ DI + G V L ++++TG G+A+V++ DA KA++ +NG + L
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLK 99
Query: 40 VEWSKP 23
V +++P
Sbjct: 100 VSFARP 105
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST-GHCKGFAYVHFKFRADAAKA- 86
T I + NL +A+ + GP+ + ++ K+K C+GF YV F DA KA
Sbjct: 20 TTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAK 79
Query: 85 --IQSLNG 68
I+S+ G
Sbjct: 80 DNIKSIKG 87
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEK--STGHCKGFAYVHFKFRADAAKAIQSL 74
I NL+ EA + + FG V + + ++K GF +V F DAAKA++ +
Sbjct: 251 IRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEM 310
Query: 73 NGHGYDHLILNVEWSKP 23
N + V+W+ P
Sbjct: 311 NAKKILGRPVAVDWAVP 327
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -1
Query: 292 RDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113
R +P +E +T I NLS + + +I +L K FG + + + T H KG A+V +
Sbjct: 406 RSKPSDVKEGLTVF-IRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKY 464
Query: 112 K 110
+
Sbjct: 465 R 465
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I I+++ +E DI + + FG V L+KE TG KG+ ++ ++ + A AI S+
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 73 N 71
N
Sbjct: 261 N 261
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
FGP++K+ L+ + KGFA+V + A A++ +NG
Sbjct: 125 FGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNG 165
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/82 (28%), Positives = 43/82 (52%)
Frame = -1
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 86
D + +SNL A E++I++L G V ++ L ++ G KG+ YV ++ + A+ A
Sbjct: 169 DKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTA 227
Query: 85 IQSLNGHGYDHLILNVEWSKPP 20
+ +L+ ++V S PP
Sbjct: 228 VLTLDKTEVKGRTISVALSNPP 249
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + NL E D+ D+ +G + + L + G FA+V F+ DA A++
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG--PPFAFVEFEDPRDAEDAVKGR 320
Query: 73 NGHGYDHLILNVEWSK 26
+GH +D + VE+ +
Sbjct: 321 DGHEFDGYRIRVEFPR 336
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + + +L EA + + + FG V + L + T KG+ +V F+ A +A++
Sbjct: 242 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 79 SLNG 68
+NG
Sbjct: 302 QMNG 305
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 34.7 bits (76), Expect = 0.082
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 313 SAGRIPGRDQPPVRREDV-TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 137
+A R R P E+ T + I + +E ++ L++ G + + L + +TG
Sbjct: 134 TAARFGERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLN 193
Query: 136 KGFAYVHFKFRADAAKAIQSLN 71
KGFA+ F + A +AI +LN
Sbjct: 194 KGFAFCTFTEQTSAYQAITTLN 215
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 23
FG + + + + +T +GF +V F+F D A AI ++N + V +KP
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
I NLS E +++ G V + + ++ TG +GF +V F + + KAI +G
Sbjct: 9 IGNLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDG 67
Query: 67 HGYDHLILNVEWSKP 23
+D + V ++P
Sbjct: 68 QDFDGRPMKVNQAQP 82
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Frame = -1
Query: 316 SSAGRIPGRDQPPVRRE-----DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEK 152
SS+ R + P RR+ T + +++L+ + + ++ +G V + L ++
Sbjct: 1133 SSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDR 1192
Query: 151 STGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17
+ +GFAYV + + KA++ ++G D + V+ PP+
Sbjct: 1193 TNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPR 1237
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = -1
Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83
V + + NLS E + + +G V ++ K+ +A+VHF R A KAI
Sbjct: 328 VKVVYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKD--------YAFVHFTERDHALKAI 379
Query: 82 QSLNGHGYDHLILNVEWSKPPQNN 11
+ +G D L + +KP N
Sbjct: 380 EETDGKEMDGLKIEASLAKPQPGN 403
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = -1
Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 137
SS+ R+ + T + I L + D+ L +G + +K T C
Sbjct: 81 SSSDRMDSLPDTGEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLC 140
Query: 136 KGFAYVHFKFRADAAKAIQSLNGHG 62
KG+ +V F+ A KA+ +L G
Sbjct: 141 KGYGFVDFESPISAQKAVAALVNKG 165
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKL-YLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71
I NL E + D FG + + + ++ TG+ KGFA+++F + AI+++N
Sbjct: 104 IGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMN 163
Query: 70 G 68
G
Sbjct: 164 G 164
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = -1
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 86
D + + I +L +AD+ + FG V + +K T K F +V + A A
Sbjct: 275 DGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNA 334
Query: 85 IQSLNGHGYDHLILNVEWSKPPQNN 11
IQ +NG L V+ +P N
Sbjct: 335 IQHMNGFQIGAKRLKVQLKRPKDAN 359
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -1
Query: 274 RREDVTAIRISNLSNFAVEADIDD--LVKGFGPVHKLYLAK--EKSTGHCKGFAYVHFKF 107
R+E + + NL ++ IDD L + F P + AK + G+ KGF +V F
Sbjct: 202 RQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSS 261
Query: 106 RADAAKAIQSLNG 68
+A KA+ +NG
Sbjct: 262 PEEATKAVTEMNG 274
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.5 bits (68), Expect = 0.76
Identities = 20/97 (20%), Positives = 42/97 (43%)
Frame = -1
Query: 313 SAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK 134
SA R+ + ++ + +I + +V+ + + F + + ++ TG +
Sbjct: 78 SAKRLLSQPLKKNKKTNTMSIHVPTNVEDSVKCLVASIPLCFVASEAVNIITDRETGRPR 137
Query: 133 GFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 23
GF +V F + + KAI +G D + V +KP
Sbjct: 138 GFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKP 174
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 166 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 59
L + +TG KGFAYV + A A + LNG Y
Sbjct: 233 LKRNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEY 268
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77
+ D+ + FG + + + ++ T KG+ YV F + AA A+++
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALEN 113
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 664 EKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDG 485
E+ + +KS + K+ S GDS S P P+ + + ++V Q ++ ++ D E G
Sbjct: 74 EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSEETG 133
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41
EAD+ L G + + + ++ TG +GF +V F + KAI +G D +
Sbjct: 22 EADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMK 81
Query: 40 VEWSKP 23
V ++P
Sbjct: 82 VNKAQP 87
>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
Length = 442
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 104 PELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVINISFNCKI 232
P+L V ++ FA +S F ++++F+ F ++N +NC +
Sbjct: 179 PQLIVKVTSKFAETSCFGEKRLKFIRHNTLFVLLLNSDWNCTV 221
>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 159
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -1
Query: 502 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 395
DG+ G KPP S + KC C G H C F ++
Sbjct: 100 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 137
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -1
Query: 502 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 395
DG+ G KPP S + KC C G H C F ++
Sbjct: 1230 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 187 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG-HGYDHLILNVEWSKPPQNN 11
GP+ + + +K+TG + F +V F A + L+G YD I NV KP NN
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAI-NV---KPQSNN 536
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 166 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 14
+ K+ + KGF +V F R DAAKAI ++ + W+ N
Sbjct: 544 VVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 697 KKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS 527
K +++R Y+IEK +S+AK W KF + PNP T +D F
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDDPKAYFALL 612
Query: 526 KEESQRPDD 500
+S +D
Sbjct: 613 NNDSIEVND 621
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 322 PPSSAGRIPGRDQPPVRRED 263
P RIPG DQP V RED
Sbjct: 630 PVKRVSRIPGNDQPRVSRED 649
>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
Length = 521
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -1
Query: 670 KIEKRV-VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS----KEESQRP 506
K KR + S +KT ++ D +DK P+P+ + D + I KE++++
Sbjct: 229 KTSKRPRIGASPVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLNMKEKTEKS 288
Query: 505 DDGELDGLKPPSSNVIFK 452
D +L L +N+IFK
Sbjct: 289 VDAQLADL---VNNLIFK 303
>SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)
Length = 425
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 721 EYKYDNDNKKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAED 551
+Y YD + + + KIEK+ +S+AK W KFG+ PNP T +D
Sbjct: 304 QYIYDYERHQGVCMDPSKIEKKPGLRSVAKMGLNCMWGKFGEQ------PNPQRTEYVDD 357
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 11
FG V + +K T K F +V + A AIQ +NG L V+ +P N
Sbjct: 285 FGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDAN 344
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 283 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGP 182
P V +DVT S+ S AV D+D+ G GP
Sbjct: 1925 PEVSLDDVTLTVESHASRQAVVEDLDEFTAGLGP 1958
>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
Length = 415
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 694 KVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 560
K I+R Y+ ++ + KR W +FG + K GP +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 232 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK--GFAYVHFKFRADAAKAIQSLNG 68
+F V AD++ + G H + + + + GF +V F A+A KA + LNG
Sbjct: 90 SFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNTAAEANKAREKLNG 146
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 757 SEVVENGLKI-VTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 581
S+ +EN KI + E +N+N +++ Y R K +++KT S+ + + P
Sbjct: 469 SKNIENRNKIELLEDAAENENSGIRVYNAYSALCRKEKKPQSEKKTPSETKSALTSSKKP 528
Query: 580 NPATT 566
+P T
Sbjct: 529 SPLAT 533
>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
Length = 410
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -1
Query: 757 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSK 614
S++++N I+ Y+ +N + K+K +RT KI + S+ K W +
Sbjct: 44 SKILQNKETILASYENNNGHIKIKRIRTGKIYR--TSRYFDNDKAWMR 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,521,572
Number of Sequences: 59808
Number of extensions: 405989
Number of successful extensions: 1276
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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