BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10i16r (757 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 143 1e-34 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 137 8e-33 At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 52 3e-07 At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 52 3e-07 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 52 5e-07 At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 50 2e-06 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 5e-06 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 7e-06 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 47 1e-05 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 47 1e-05 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 2e-05 At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 46 4e-05 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 2e-04 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 3e-04 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 3e-04 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 6e-04 At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001 At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001 At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.002 At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002 At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.002 At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 0.002 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.005 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.005 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.007 At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.007 At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.007 At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.007 At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.010 At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.010 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.010 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.010 At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.010 At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 38 0.010 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.010 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013 At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 37 0.017 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.017 At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.022 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.022 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.029 At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.029 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.029 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.029 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.029 At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.029 At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.038 At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.038 At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.038 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.038 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.051 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.051 At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.051 At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.051 At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 35 0.067 At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.067 At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 34 0.089 At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 34 0.12 At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.12 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.15 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.15 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.15 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.15 At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.15 At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.20 At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.20 At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.20 At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.20 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.27 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 32 0.36 At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.47 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.47 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.47 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.62 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.62 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.62 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.62 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.83 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.83 At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.4 At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 1.4 At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 30 1.4 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.4 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.4 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.9 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 1.9 At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 1.9 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.5 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 29 2.5 At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 2.5 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.5 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.5 At1g71410.1 68414.m08247 protein kinase family protein contains ... 29 2.5 At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.5 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 29 3.3 At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 3.3 At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 3.3 At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.3 At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.3 At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 29 4.4 At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 29 4.4 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 5.8 At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 5.8 At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 5.8 At1g22870.1 68414.m02855 protein kinase family protein contains ... 28 5.8 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 7.7 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 7.7 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 7.7 At5g37040.1 68418.m04442 F-box family protein contains Pfam prof... 28 7.7 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 143 bits (346), Expect = 1e-34 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%) Frame = -1 Query: 745 ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATT 566 +NG+K V EYK++ ++KKVKI T +++KR ++K +R++W+KFGD+A ++ + T Sbjct: 6 QNGVKKVIEYKFNEEDKKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEESS-SYLTM 64 Query: 565 NVAEDVFMQFIT---SKEESQRPDDGELDGLKPPSSNVIFKCRTCQ--GDHLTLYCPFKH 401 ED+ ++ I S E + L P + V+ CR CQ GDH T CP K Sbjct: 65 RSTEDIILERIRAPGSNAEQSTVSGDSMSQLGKPGA-VLMVCRLCQKKGDHWTSRCPQKD 123 Query: 400 T-QIXXXXXXXXXXXXXXXXXASNKYIPPS---SAGRIPGRDQPPVRREDVTAIRISNLS 233 + Y+PPS A R G R D ++R++NLS Sbjct: 124 LLSLMDEPLTAETSTSTITGTGRAAYVPPSMREGADRKAGGSDMR-SRHDENSVRVTNLS 182 Query: 232 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH 53 D+ +L + FG V + ++A ++ T +GF +V F R DA +AI LNG+GYD+ Sbjct: 183 EDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDN 242 Query: 52 LILNVEWSKP 23 LIL VEWS P Sbjct: 243 LILRVEWSTP 252 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 137 bits (331), Expect = 8e-33 Identities = 91/261 (34%), Positives = 137/261 (52%), Gaps = 20/261 (7%) Frame = -1 Query: 745 ENGLKIVTEYKYDNDNKKVKIV---RTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNP 575 ENGLK EYK++++ KVKI R K+ ++K +R+ W KFGD+A+++ G + Sbjct: 37 ENGLKTTIEYKFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSH- 95 Query: 574 ATTNVAEDVFMQFI----TSKEESQRPDDGELDGLKPPSSNVIFKCRTC--QGDHLTLYC 413 T E++ ++ T +ES+ DG L L + V+ CR C +GDH T C Sbjct: 96 LTMVSTEEILLERPRAPGTKADESKATGDG-LSQLGKGGA-VLMVCRICHKKGDHWTSKC 153 Query: 412 PFKH----TQIXXXXXXXXXXXXXXXXXASNK--YIPPSSAGRIPGRDQPPV-----RRE 266 P+K T + + K Y+PPS G D+ V RR Sbjct: 154 PYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRA---GADRSAVGSDMRRRN 210 Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 86 D ++R++NLS E D+ +L FG V ++Y+A ++ TG +GF +V+F R DA +A Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270 Query: 85 IQSLNGHGYDHLILNVEWSKP 23 I LNG+GYD+LIL VEW+ P Sbjct: 271 INKLNGYGYDNLILRVEWATP 291 >At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 52.4 bits (120), Expect = 3e-07 Identities = 27/98 (27%), Positives = 54/98 (55%) Frame = -1 Query: 295 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 116 GR PP D ++ + N++ D+ L +G V +++ +++ TG +GFA+V Sbjct: 5 GRSGPP-DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63 Query: 115 FKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*KV 2 +K++ +A KA++ L+G D + V+++K N K+ Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101 >At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 52.4 bits (120), Expect = 3e-07 Identities = 27/98 (27%), Positives = 54/98 (55%) Frame = -1 Query: 295 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 116 GR PP D ++ + N++ D+ L +G V +++ +++ TG +GFA+V Sbjct: 5 GRSGPP-DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63 Query: 115 FKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*KV 2 +K++ +A KA++ L+G D + V+++K N K+ Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 51.6 bits (118), Expect = 5e-07 Identities = 28/75 (37%), Positives = 40/75 (53%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 I NL A +DI + G V +++ K TG KGFA+V F + DAA AI+ NG Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394 Query: 67 HGYDHLILNVEWSKP 23 H + + V+W+ P Sbjct: 395 HMFGKRPIAVDWAVP 409 Score = 39.9 bits (89), Expect = 0.002 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 +S L A +++ GPV + +L K + +GFA+V F + D +AI+ NG Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83 >At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659 Length = 220 Score = 49.6 bits (113), Expect = 2e-06 Identities = 29/85 (34%), Positives = 45/85 (52%) Frame = -1 Query: 319 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 140 PS GR GR R+ T++ + NL + + D+ + FGPV +YL ++ TG Sbjct: 21 PSPRGRYGGRS-----RDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGD 75 Query: 139 CKGFAYVHFKFRADAAKAIQSLNGH 65 +GF +V F ADAA A ++G+ Sbjct: 76 PRGFGFVQFMDPADAADAKHHMDGY 100 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 48.4 bits (110), Expect = 5e-06 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T + + NL+ + D+ + +G + + K+ G KGF +V+F+ DAA+A++ Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVE 87 Query: 79 SLNGHGYD 56 SLNGH +D Sbjct: 88 SLNGHKFD 95 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 48.0 bits (109), Expect = 7e-06 Identities = 29/102 (28%), Positives = 46/102 (45%) Frame = -1 Query: 325 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 146 +P + A + PP T I ++NL E ++L K F + ++ K +T Sbjct: 215 VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTE---EELKKAFSQLGEVIYVKIPAT 271 Query: 145 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20 KG+ YV FK R A +A+Q + G + + WSK P Sbjct: 272 ---KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 47.2 bits (107), Expect = 1e-05 Identities = 27/102 (26%), Positives = 49/102 (48%) Frame = -1 Query: 322 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 143 PPS P + ++ + + +LS EA + ++ FG V + +A +++ Sbjct: 81 PPSKGASSPSKKAV----QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17 +G YV FK RADA KA ++G D ++ ++ PP+ Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPR 178 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 47.2 bits (107), Expect = 1e-05 Identities = 27/102 (26%), Positives = 49/102 (48%) Frame = -1 Query: 322 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 143 PPS P + ++ + + +LS EA + ++ FG V + +A +++ Sbjct: 81 PPSKGASSPSKKAV----QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17 +G YV FK RADA KA ++G D ++ ++ PP+ Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPR 178 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 46.8 bits (106), Expect = 2e-05 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = -1 Query: 319 PSSAGRIPGRDQPPVRREDV-TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 143 PS GR G R D+ T++ + NL + + D+ + FGPV +YL ++ TG Sbjct: 21 PSPRGRFGGS-----RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGH 65 +GF ++ F ADAA+A ++G+ Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGY 101 >At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28) nearly identical to SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana] GI:9843655; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 236 Score = 45.6 bits (103), Expect = 4e-05 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 + + I NL A D+ D + FGP+ +YL + TG +GF +V +++ DAA+A++ Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106 Query: 79 SLN 71 +N Sbjct: 107 RMN 109 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 43.2 bits (97), Expect = 2e-04 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Frame = -1 Query: 295 GRDQPPVRREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 125 G D PV R + + + NLS A + L + G V + + +K TG +GF Sbjct: 84 GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143 Query: 124 YVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20 +V A+ A Q NG+ ++ L V PP Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178 Score = 34.7 bits (76), Expect = 0.067 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + NLS + +++L G V + + ++ +G KGF +V + KAI SLNG Sbjct: 253 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 312 Query: 67 HGYDHLILNVE--WSKPPQ 17 D + V ++PP+ Sbjct: 313 ADLDGRQIRVSEAEARPPR 331 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 43.2 bits (97), Expect = 2e-04 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Frame = -1 Query: 295 GRDQPPVRREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 125 G D PV R + + + NLS A + L + G V + + +K TG +GF Sbjct: 84 GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143 Query: 124 YVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20 +V A+ A Q NG+ ++ L V PP Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178 Score = 34.7 bits (76), Expect = 0.067 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + NLS + +++L G V + + ++ +G KGF +V + KAI SLNG Sbjct: 261 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320 Query: 67 HGYDHLILNVE--WSKPPQ 17 D + V ++PP+ Sbjct: 321 ADLDGRQIRVSEAEARPPR 339 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 43.2 bits (97), Expect = 2e-04 Identities = 23/78 (29%), Positives = 41/78 (52%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T + +S LS E + D + FG + + + +K KGFA++ ++ +A KAIQ Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136 Query: 79 SLNGHGYDHLILNVEWSK 26 ++G D ++ VE +K Sbjct: 137 GMHGKFLDGRVIFVEEAK 154 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 42.7 bits (96), Expect = 3e-04 Identities = 22/84 (26%), Positives = 43/84 (51%) Frame = -1 Query: 280 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 101 P R + I +S + E DI + FG + L L ++ +G+ KG+A + ++ + Sbjct: 88 PQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147 Query: 100 DAAKAIQSLNGHGYDHLILNVEWS 29 +A AI ++NG ++V+W+ Sbjct: 148 EAQSAISAMNGAELLTQNVSVDWA 171 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 42.3 bits (95), Expect = 3e-04 Identities = 21/59 (35%), Positives = 34/59 (57%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71 I L E D+ DL + G + ++ L K++ +G KG+A+V FK + A KAI+ L+ Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178 Score = 30.3 bits (65), Expect = 1.4 Identities = 20/80 (25%), Positives = 36/80 (45%) Frame = -1 Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83 V A+ + N+ + +L + G V K+ K G + F +VH+ R+ A KA+ Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK--GGKRDFGFVHYAERSSALKAV 348 Query: 82 QSLNGHGYDHLILNVEWSKP 23 + + + L V +KP Sbjct: 349 KDTERYEVNGQPLEVVLAKP 368 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 41.5 bits (93), Expect = 6e-04 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = -1 Query: 283 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104 P + T + + NLS + +++ + FG + ++ G KGF +V+F+ Sbjct: 216 PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENS 274 Query: 103 ADAAKAIQSLNGHGYD 56 DAA+A+ +LNG +D Sbjct: 275 DDAARAVDALNGKTFD 290 Score = 35.9 bits (79), Expect = 0.029 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -1 Query: 283 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104 P +R+ V I I NL + + FGP+ +A + S G KG+ +V + Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTD 183 Query: 103 ADAAKAIQSLNG 68 A AI LNG Sbjct: 184 EAAQGAIDKLNG 195 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = -1 Query: 286 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 107 +PP + D T + I L + + +L FG + + K++ TG KG+ +V + Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530 Query: 106 RADAAKAIQSLNGHGYD--HLILNVEWSKPP 20 A A+Q++NG+ ++ L + + PP Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = -1 Query: 286 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 107 +PP + D T + I L + + +L FG + + K++ TG KG+ +V + Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530 Query: 106 RADAAKAIQSLNGHGYD--HLILNVEWSKPP 20 A A+Q++NG+ ++ L + + PP Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561 >At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing protein Length = 527 Score = 39.9 bits (89), Expect = 0.002 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ-SLN 71 + NL E + + + FGPV + L + TG CKGF ++ F + + +KA Q +LN Sbjct: 269 VGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQIALN 327 Query: 70 G 68 G Sbjct: 328 G 328 >At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing protein heterogeneous nuclear ribonucleoprotein R, Homo sapiens, PIR:T02673; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 471 Score = 39.9 bits (89), Expect = 0.002 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 + + + A E D+ G V ++ + +EK +G KG+A+V F+ + AA+AI +L Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153 Query: 73 N 71 N Sbjct: 154 N 154 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/80 (21%), Positives = 35/80 (43%) Frame = -1 Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83 V A+ I NL + + L + G + K+ + K + +VH+ R +A+ Sbjct: 267 VKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326 Query: 82 QSLNGHGYDHLILNVEWSKP 23 ++ + D +L+ +KP Sbjct: 327 KNTERYEIDGHMLDCTLAKP 346 >At3g08000.1 68416.m00977 RNA-binding protein, putative similar to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 143 Score = 39.9 bits (89), Expect = 0.002 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 I LS E + D FG V ++ +A +K +G +GF +V F DA A +++G Sbjct: 45 IGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDG 104 Query: 67 HG 62 G Sbjct: 105 KG 106 >At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit GB:CAA77136 from [Nicotiana plumbaginifolia] Length = 589 Score = 39.9 bits (89), Expect = 0.002 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + L + E I +L++ FGP+ L K++ TG+ KG+A+ ++ + A +L Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436 Query: 73 NG 68 NG Sbjct: 437 NG 438 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 38.3 bits (85), Expect = 0.005 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = -1 Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83 +T + S LS + + + L F P +L K++ T KGF ++ F+ DA KA+ Sbjct: 70 LTCVSNSGLSAYTTDQSLRQL---FAPFARLI--KDQQTQRPKGFGFITFESEDDAQKAL 124 Query: 82 QSLNGHGYDHLILNVEWSK 26 ++LNG + ++ VE +K Sbjct: 125 KALNGKIVNGRLIFVETAK 143 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 38.3 bits (85), Expect = 0.005 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = -1 Query: 274 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104 +RED ++ I + +LS +A + D F + ++ TG +GF +V F+ + Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199 Query: 103 ADAAKAIQSLNGHGYDHLILNVEWS 29 DA AI +NG + W+ Sbjct: 200 QDAQTAINEMNGKWVSSRQIRCNWA 224 Score = 29.9 bits (64), Expect = 1.9 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Frame = -1 Query: 319 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTG 143 P +G +P P R ++ N+ E + ++ GP+ L K+KS+ Sbjct: 47 PLPSGNLPPGFDPTTCR----SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS- 101 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29 + +VH+ R A+ AI +LNG + V W+ Sbjct: 102 ----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135 Score = 29.9 bits (64), Expect = 1.9 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = -1 Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDL--VKGFGPVHKLYLAKEKSTG 143 S GR + P T + + NLS + D+ L G G + ++ + ++K Sbjct: 250 SEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--- 306 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGY 59 GF +V + +AA AIQ N + Sbjct: 307 ---GFGFVRYNTHDEAALAIQMGNAQPF 331 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 37.9 bits (84), Expect = 0.007 Identities = 16/44 (36%), Positives = 27/44 (61%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 59 FGPV +Y+ ++ +G +GFA+V F DA +A +S+N + Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113 >At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch domain-containing protein / RNA recognition motif (RRM)-containing protein KIAA0122 gene , Homo sapiens, EMBL:HSDKG02; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF01585: G-patch domain, weak hit to PF00641: Zn-finger in Ran binding protein and others Length = 1105 Score = 37.9 bits (84), Expect = 0.007 Identities = 19/69 (27%), Positives = 40/69 (57%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + LS + E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+ + Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAARTMMDRIE 360 Query: 67 HGYDHLILN 41 H D ++L+ Sbjct: 361 H--DGIVLD 367 Score = 36.7 bits (81), Expect = 0.017 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -1 Query: 184 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH--LILNVEWSK 26 P+ L L ++K T +GFA+VHF DA KA+++ N + IL V ++K Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 37.9 bits (84), Expect = 0.007 Identities = 18/71 (25%), Positives = 39/71 (54%) Frame = -1 Query: 280 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 101 PV+ D + + L+ + +++++ +G + +Y+A + C+G+A+V F + Sbjct: 200 PVQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKE 258 Query: 100 DAAKAIQSLNG 68 A AI++LNG Sbjct: 259 MALAAIKALNG 269 >At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing protein Length = 116 Score = 37.9 bits (84), Expect = 0.007 Identities = 21/79 (26%), Positives = 39/79 (49%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + +S + E + +G V K+ + +K KGFAYV F + +A KA+ LN Sbjct: 25 VKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNA 84 Query: 67 HGYDHLILNVEWSKPPQNN 11 D ++ ++ +K ++N Sbjct: 85 QLVDGRVVILDTTKAAKHN 103 >At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing protein similar to SP|P48809 Heterogeneous nuclear ribonucleoprotein 27C (hnRNP 48) {Drosophila melanogaster}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); non-consensus TA donor splice site at exon 6 Length = 379 Score = 37.5 bits (83), Expect = 0.010 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = -1 Query: 223 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 47 +++D + D + FG + + K++STG +GF YV F DA A++ H + I Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRI 71 Query: 46 LNVEWSKPPQ 17 L V+ + P + Sbjct: 72 LEVKVATPKE 81 >At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing protein low similarity to heterogeneous nuclear ribonucleoprotein G [Mus musculus] GI:5579009; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 152 Score = 37.5 bits (83), Expect = 0.010 Identities = 19/77 (24%), Positives = 41/77 (53%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + NL E + FG + ++ L K+++ KG+A++ F + DA AI+++ Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101 Query: 73 NGHGYDHLILNVEWSKP 23 + Y+ ++ ++ +KP Sbjct: 102 DRRMYNGRMIYIDIAKP 118 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 37.5 bits (83), Expect = 0.010 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T + + N++ A + ++ L FG + + L K K+ G G+A+V F + +A A + Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKK 727 Query: 79 SL-NGHGYD-HLILNVEWS 29 +L + H Y HL+L EW+ Sbjct: 728 ALASTHFYGRHLVL--EWA 744 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 37.5 bits (83), Expect = 0.010 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + NL E +++DL +GPV ++ L K G+A+V F+ DA AI Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGR 65 Query: 73 NGHGYDHLILNVE 35 +G+ +D L VE Sbjct: 66 DGYDFDGHHLRVE 78 >At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 178 Score = 37.5 bits (83), Expect = 0.010 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + NL E +++DL +GPV ++ L K G+A+V F+ DA AI Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGR 65 Query: 73 NGHGYDHLILNVE 35 +G+ +D L VE Sbjct: 66 DGYDFDGHHLRVE 78 >At2g37510.1 68415.m04600 RNA-binding protein, putative similar to SP|P10979 Glycine-rich RNA-binding, abscisic acid-inducible protein {Zea mays}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 142 Score = 37.5 bits (83), Expect = 0.010 Identities = 19/75 (25%), Positives = 34/75 (45%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 +S LS + D FG + + ++ +G KGF +V + DA KA +N Sbjct: 38 VSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNA 97 Query: 67 HGYDHLILNVEWSKP 23 D ++ V+ ++P Sbjct: 98 KFLDGWVIFVDPARP 112 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 37.5 bits (83), Expect = 0.010 Identities = 20/63 (31%), Positives = 36/63 (57%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 +++ + +L E+ + DL PVH L + ++ T G+AYV+F DA++A++ Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103 Query: 79 SLN 71 SLN Sbjct: 104 SLN 106 Score = 28.3 bits (60), Expect = 5.8 Identities = 21/78 (26%), Positives = 31/78 (39%) Frame = -1 Query: 301 IPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 122 + RD P R + I NL + + FG + +A + G KG+ + Sbjct: 119 LSNRD-PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGF 176 Query: 121 VHFKFRADAAKAIQSLNG 68 V F+ A AI LNG Sbjct: 177 VQFEKEETAQAAIDKLNG 194 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 37.1 bits (82), Expect = 0.013 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 + + NL E +++DL +GPV ++ L K G+A+V F DA AI Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65 Query: 73 NGHGYDHLILNVE 35 +G+ +D L VE Sbjct: 66 DGYDFDGHRLRVE 78 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 37.1 bits (82), Expect = 0.013 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 + + NL E +++DL +GPV ++ L K G+A+V F DA AI Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65 Query: 73 NGHGYDHLILNVE 35 +G+ +D L VE Sbjct: 66 DGYDFDGHRLRVE 78 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 37.1 bits (82), Expect = 0.013 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 + + NL E +++DL +GPV ++ L K G+A+V F DA AI Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65 Query: 73 NGHGYDHLILNVE 35 +G+ +D L VE Sbjct: 66 DGYDFDGHRLRVE 78 >At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 374 Score = 36.7 bits (81), Expect = 0.017 Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Frame = -1 Query: 289 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 110 + PPV+ + + I+ LS + E + +GFG + ++ + +K + KG+A++ + Sbjct: 275 ESPPVKTKKLF---ITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT 331 Query: 109 FRADAAKAIQSLNG---HGYDHLILNVEWSKPPQNN 11 A A++ +NG +G+ ++++V +KP + N Sbjct: 332 TEEAAGTALKEMNGKIINGW-MIVVDVAKTKPFRQN 366 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 36.7 bits (81), Expect = 0.017 Identities = 17/68 (25%), Positives = 36/68 (52%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T + + NLS + ++ +G + + ++ G + F +V+F+ DAA+A++ Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE 283 Query: 79 SLNGHGYD 56 +LNG +D Sbjct: 284 ALNGKKFD 291 >At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 427 Score = 36.3 bits (80), Expect = 0.022 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Frame = -1 Query: 298 PGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 119 P D P + + +S L+ + E+ I + +GP+ +++L ++ T KG+A++ Sbjct: 126 PNND-PNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFI 184 Query: 118 HFKFRADAAKAIQSLNGHGYD--HLILNVEWSKPPQN 14 + D A + +G D ++++VE + N Sbjct: 185 EYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPN 221 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 36.3 bits (80), Expect = 0.022 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + NL E D+ + + FG V + + +++ TG CKGF +V F DA A+ +LNG Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NLNG 346 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 35.9 bits (79), Expect = 0.029 Identities = 21/87 (24%), Positives = 39/87 (44%) Frame = -1 Query: 274 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 95 RR + + I LS E + + G V + + ++ + KGF +V F +A Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88 Query: 94 AKAIQSLNGHGYDHLILNVEWSKPPQN 14 KA+ NG + + V+++K Q+ Sbjct: 89 QKALMEFNGQQLNGRTIFVDYAKAKQS 115 >At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 674 Score = 35.9 bits (79), Expect = 0.029 Identities = 24/89 (26%), Positives = 40/89 (44%) Frame = -1 Query: 280 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 101 P+ I ++N+ A + + FG V K ++ + +TG G AY+ F R Sbjct: 509 PLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFT-RK 567 Query: 100 DAAKAIQSLNGHGYDHLILNVEWSKPPQN 14 +AA+ SL+G + IL + QN Sbjct: 568 EAAENALSLDGTSFMSRILKIVKGSNGQN 596 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 35.9 bits (79), Expect = 0.029 Identities = 21/76 (27%), Positives = 32/76 (42%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + NL A + L + G V + + +K TG +GF +V ++ A Q NG Sbjct: 95 VGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNG 154 Query: 67 HGYDHLILNVEWSKPP 20 + D L V PP Sbjct: 155 YELDGRPLRVNAGPPP 170 Score = 31.9 bits (69), Expect = 0.47 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 + + NLS + ++ L G V + + ++ +G KGF +V + + AI+SL Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 73 NGHGYDHLILNVE--WSKPPQ 17 +G D + V ++PP+ Sbjct: 266 DGADLDGRQIRVSEAEARPPR 286 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 35.9 bits (79), Expect = 0.029 Identities = 20/67 (29%), Positives = 37/67 (55%) Frame = -1 Query: 268 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 89 E T + + NL E + + FG + L +AK+++ C+G+A+V+F DA + Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARR 256 Query: 88 AIQSLNG 68 A +++NG Sbjct: 257 AAETVNG 263 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 35.9 bits (79), Expect = 0.029 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = -1 Query: 325 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKS 149 I P +G +P P R ++ + N+ E + ++ G GPV L KEKS Sbjct: 36 IEPIPSGNLPPGFDPSTCR----SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS 91 Query: 148 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29 + + +VH+ R A AI SLNG + V W+ Sbjct: 92 S-----YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126 Score = 30.3 bits (65), Expect = 1.4 Identities = 21/86 (24%), Positives = 33/86 (38%) Frame = -1 Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 137 S G+ + P T + + NL+ + D+ G + +E Sbjct: 241 SEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAG----VIEEVRVQRD 296 Query: 136 KGFAYVHFKFRADAAKAIQSLNGHGY 59 KGF +V + +AA AIQ N H Y Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHSY 322 Score = 29.9 bits (64), Expect = 1.9 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -1 Query: 157 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29 ++ TG +GF +V F+ + DA AI + G + W+ Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215 >At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing protein Length = 573 Score = 35.9 bits (79), Expect = 0.029 Identities = 19/79 (24%), Positives = 39/79 (49%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T + + L + +A+I+ ++ +G V ++ E+ +G KG+ V F A AA + Sbjct: 202 TMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 261 Query: 79 SLNGHGYDHLILNVEWSKP 23 +NG ++ V ++ P Sbjct: 262 GMNGFIFNGKACVVAFASP 280 >At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 565 Score = 35.5 bits (78), Expect = 0.038 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420 Query: 73 NG 68 NG Sbjct: 421 NG 422 >At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 542 Score = 35.5 bits (78), Expect = 0.038 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420 Query: 73 NG 68 NG Sbjct: 421 NG 422 >At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 573 Score = 35.5 bits (78), Expect = 0.038 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420 Query: 73 NG 68 NG Sbjct: 421 NG 422 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 35.5 bits (78), Expect = 0.038 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Frame = -1 Query: 274 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLY----LAKEKSTGHCKGFAYVH 116 +RED ++ I + +LS +A + D F Y + ++ TG +GF +V Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVS 199 Query: 115 FKFRADAAKAIQSLNGHGYDHLILNVEWS 29 F+ + DA AI +NG + W+ Sbjct: 200 FRNQQDAQTAINEMNGKWVSSRQIRCNWA 228 Score = 29.9 bits (64), Expect = 1.9 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Frame = -1 Query: 319 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTG 143 P +G +P P R ++ N+ E + ++ GP+ L K+KS+ Sbjct: 47 PLPSGNLPPGFDPTTCR----SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS- 101 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29 + +VH+ R A+ AI +LNG + V W+ Sbjct: 102 ----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135 Score = 29.9 bits (64), Expect = 1.9 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = -1 Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDL--VKGFGPVHKLYLAKEKSTG 143 S GR + P T + + NLS + D+ L G G + ++ + ++K Sbjct: 254 SEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--- 310 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGY 59 GF +V + +AA AIQ N + Sbjct: 311 ---GFGFVRYNTHDEAALAIQMGNAQPF 335 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 35.1 bits (77), Expect = 0.051 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 E D+ + +G + + L ++K TG KGFA++ ++ + A+ +LNG Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 35.1 bits (77), Expect = 0.051 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Frame = -1 Query: 274 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104 +RED ++ I + +LS +A + F + ++ TG +GF +V F+ + Sbjct: 136 QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQ 195 Query: 103 ADAAKAIQSLNGHGYDHLILNVEWS 29 DA AI +NG + W+ Sbjct: 196 QDAQTAINEMNGKWLSSRQIRCNWA 220 Score = 34.3 bits (75), Expect = 0.089 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = -1 Query: 325 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKS 149 + P +G +P P R ++ + N+ E + ++ GPV L K+KS Sbjct: 41 LEPVPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS 96 Query: 148 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29 + + +VH+ R AA AI SLNG + V W+ Sbjct: 97 S-----YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/86 (23%), Positives = 33/86 (38%) Frame = -1 Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 137 S G+ ++ P T + + NL+ + D+ G + +E Sbjct: 246 SEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAG----VIEEVRVQRD 301 Query: 136 KGFAYVHFKFRADAAKAIQSLNGHGY 59 KGF +V + +AA AIQ N Y Sbjct: 302 KGFGFVRYNTHPEAALAIQMGNTQPY 327 >At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 347 Score = 35.1 bits (77), Expect = 0.051 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1 Query: 196 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 +G+G + + + +K+TG KGF +V FK R A +A++ Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163 >At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 343 Score = 35.1 bits (77), Expect = 0.051 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -1 Query: 196 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 +G+G + + + +K+TG KGF +V FK R A +A++ Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163 >At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 34.7 bits (76), Expect = 0.067 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = -1 Query: 253 IRISNL-SNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77 I + NL S E + D+ G + + L K KS G + FAY+ F+ +A AI Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITY 62 Query: 76 LNGHGYDHLILNVEWSKPP 20 +N D ++VE + PP Sbjct: 63 VNKCFIDTYRISVEVADPP 81 >At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 264 Score = 34.7 bits (76), Expect = 0.067 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = -1 Query: 238 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--H 65 + NF E DL + F ++ KS G+A+V+F+ DA AI+ L+ Sbjct: 6 VGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLDNFPF 60 Query: 64 GYDHLILNVEWSK 26 GY+ L+VEW+K Sbjct: 61 GYEKRRLSVEWAK 73 >At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing protein Length = 710 Score = 34.3 bits (75), Expect = 0.089 Identities = 18/75 (24%), Positives = 39/75 (52%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + +L + +A+++ + +G V ++ EK++G KG+ V F A+ +LNG Sbjct: 238 VGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNG 297 Query: 67 HGYDHLILNVEWSKP 23 + ++ VE++ P Sbjct: 298 YPFNGRPCVVEYASP 312 >At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana] ; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 87 Score = 33.9 bits (74), Expect = 0.12 Identities = 14/64 (21%), Positives = 32/64 (50%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T + + NLS + + + G+G V + +++ T +GF +V + ++A A+ Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62 Query: 79 SLNG 68 ++G Sbjct: 63 GMDG 66 >At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing protein similar to ssRNA-binding protein [Dictyostelium discoideum] GI:1546894; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 245 Score = 33.9 bits (74), Expect = 0.12 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 E + D L K F +AK +K TG KG+ +V F AD A A++ +NG Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG 200 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 33.5 bits (73), Expect = 0.15 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41 + D+ FG V + ++ +G +GF +V FK AI+ +NG D ++ Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78 Query: 40 V 38 V Sbjct: 79 V 79 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 33.5 bits (73), Expect = 0.15 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41 + D+ FG V + ++ +G +GF +V FK AI+ +NG D ++ Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78 Query: 40 V 38 V Sbjct: 79 V 79 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 33.5 bits (73), Expect = 0.15 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41 + D+ FG V + ++ +G +GF +V FK AI+ +NG D ++ Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78 Query: 40 V 38 V Sbjct: 79 V 79 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 33.5 bits (73), Expect = 0.15 Identities = 19/77 (24%), Positives = 35/77 (45%) Frame = -1 Query: 256 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77 ++ + +LS E D+ D PV ++L + TG +AY++F A+ A+ Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81 Query: 76 LNGHGYDHLILNVEWSK 26 LN + + WS+ Sbjct: 82 LNHSDLKGKAMRIMWSQ 98 >At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Daucus carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 185 Score = 33.5 bits (73), Expect = 0.15 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 56 E I+ FG V + ++ TG KGF +V FK AI +NG D Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111 >At5g61030.1 68418.m07659 RNA-binding protein, putative similar to RNA-binding protein from [Solanum tuberosum] GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 309 Score = 33.1 bits (72), Expect = 0.20 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = -1 Query: 238 LSNFAVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + A D D L + F G V + ++ TG +GF +V F A+ AIQ+L+G Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDG 103 Query: 67 HGYDHLILNVEWS 29 ++ V ++ Sbjct: 104 RDLHGRVVKVNYA 116 >At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 33.1 bits (72), Expect = 0.20 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71 FG + + + +K+TG KG+ +V FK A +A Q++N Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84 >At1g71800.1 68414.m08298 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton subunit GB:AAD47839 GI:5713194 from [Drosophila melanogaster], SP|P33240 Cleavage stimulation factor, 64 kDa subunit {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 461 Score = 33.1 bits (72), Expect = 0.20 Identities = 17/74 (22%), Positives = 35/74 (47%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + N+ A E + ++ GPV L ++ TG KG+ + +K A A ++L Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQS 72 Query: 67 HGYDHLILNVEWSK 26 + + L V++++ Sbjct: 73 YEINGRQLRVDFAE 86 >At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to RNA binding protein GI:18181938 from (Arabidopsis thaliana); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain 15450911 gb AY054536.1 Length = 360 Score = 33.1 bits (72), Expect = 0.20 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 +G V + +AKEK TG +GF +V F D KA++ Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 32.7 bits (71), Expect = 0.27 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 62 + D+ FG V + ++ +G +GF +V FK AI+ +NG G Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSG 71 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 32.3 bits (70), Expect = 0.36 Identities = 17/77 (22%), Positives = 38/77 (49%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 I L+ + + D + +G + + + +K +G +GF ++ F + +AI ++NG Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNG 70 Query: 67 HGYDHLILNVEWSKPPQ 17 D + V+ ++P Q Sbjct: 71 MDLDGRTITVDKAQPHQ 87 >At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein GI:1279562 from [Medicago sativa] Length = 557 Score = 31.9 bits (69), Expect = 0.47 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -1 Query: 244 SNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 +NLS AD+++ K G V + + + G +GF +V F +A KA++ Sbjct: 302 ANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 31.9 bits (69), Expect = 0.47 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = -1 Query: 232 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG Sbjct: 345 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 402 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 31.9 bits (69), Expect = 0.47 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = -1 Query: 232 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG Sbjct: 336 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 393 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 31.5 bits (68), Expect = 0.62 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 56 +G V + ++ TG +GF +V FK AI+ +NG D Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 56 +G V + ++ TG +GF +V FK AI+ +NG D Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 31.1 bits (67), Expect = 0.83 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74 + + N +D++ L FG V ++ + KS G+A+V+F+ DA AI+ Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KS-----GYAFVYFEDERDAEDAIRRT 55 Query: 73 NG--HGYDHLILNVEWSK 26 + GY L+VEW+K Sbjct: 56 DNTTFGYGRRKLSVEWAK 73 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 31.1 bits (67), Expect = 0.83 Identities = 23/78 (29%), Positives = 32/78 (41%) Frame = -1 Query: 301 IPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 122 + RD P R I I NL + + FG + +A + TG KG+ + Sbjct: 123 LSNRD-PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGF 180 Query: 121 VHFKFRADAAKAIQSLNG 68 V F+ A AI LNG Sbjct: 181 VQFEKEESAQAAIDKLNG 198 >At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear transport factor 2 (NTF2) domain Length = 1294 Score = 30.3 bits (65), Expect = 1.4 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK-AIQS 77 IR+ +L A A ++ + K FGP+ K + +A+V F+ ADAAK AIQ+ Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFE-EADAAKRAIQA 610 Query: 76 --LNGHGY 59 LN G+ Sbjct: 611 SPLNVDGH 618 >At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 224 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = -1 Query: 133 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 26 G+A+V+F+ DA AI+ + GY L+VEW+K Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47 >At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1007 Score = 30.3 bits (65), Expect = 1.4 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = -1 Query: 241 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 65 N+SN +E +D +KG +H L L+ K +AD +++SLNGH Sbjct: 766 NISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGH 824 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/82 (23%), Positives = 34/82 (41%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T I + L + + D+ FG + + + K G +V F R +A +A++ Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG------FVQFVNRPNAEEALE 359 Query: 79 SLNGHGYDHLILNVEWSKPPQN 14 LNG + + W + P N Sbjct: 360 KLNGTVIGKQTVRLSWGRNPAN 381 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/82 (23%), Positives = 34/82 (41%) Frame = -1 Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 T I + L + + D+ FG + + + K G +V F R +A +A++ Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG------FVQFVNRPNAEEALE 357 Query: 79 SLNGHGYDHLILNVEWSKPPQN 14 LNG + + W + P N Sbjct: 358 KLNGTVIGKQTVRLSWGRNPAN 379 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 29.9 bits (64), Expect = 1.9 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = -1 Query: 208 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29 DDL FG +L K + C +V + RA A +A+ LNG + + W Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348 Query: 28 KPPQN 14 + P N Sbjct: 349 RSPSN 353 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/33 (27%), Positives = 20/33 (60%) Frame = -1 Query: 166 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 + +++TG KG+ +V F ++ +A+ +NG Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 29.9 bits (64), Expect = 1.9 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -1 Query: 196 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17 + FG V + +K+TG K F +V + +A A AI +NG L V+ + Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429 Query: 16 N 14 N Sbjct: 430 N 430 >At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar to U2 small nuclear ribonucleoprotein auxiliary factor 35 kD subunit related protein 1 (sp|Q15695) Length = 757 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 32 H KG YVH++ A A QS+NG + +N E+ Sbjct: 333 HLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEF 369 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKG-FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77 I + +L+ + + D K +G V + +++TG KG+ +V F + +A+ Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215 Query: 76 LNG 68 +NG Sbjct: 216 MNG 218 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 29.5 bits (63), Expect = 2.5 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -1 Query: 136 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20 KG +V F R A AI+SLNG + + W + P Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394 >At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 29.5 bits (63), Expect = 2.5 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = -1 Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 I +SN+S + + FG + + L +K+TG KGFA ++ A KA++ Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 29.5 bits (63), Expect = 2.5 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71 FG + + + +K+TG KG+ +V F+ A +A+ N Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 29.5 bits (63), Expect = 2.5 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71 FG + + + +K+TG KG+ +V F+ A +A+ N Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79 >At1g71410.1 68414.m08247 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 909 Score = 29.5 bits (63), Expect = 2.5 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = -2 Query: 234 AILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 82 A+L L ++ TL K A+ I T++R +D + LMCT + + KQ+ Sbjct: 524 ALLCLAELVQTLDKPAAIEILETIQRCTAVDRSAPTLMCTLAVANAILKQY 574 >At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 29.5 bits (63), Expect = 2.5 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71 FG + + + +K+TG KG+ +V F+ A +A+ N Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/65 (26%), Positives = 30/65 (46%) Frame = -1 Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 86 D ++ + N+ ++ + G VH++ + +K G KGFAYV F +A + Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEF-VEVEAVQE 147 Query: 85 IQSLN 71 LN Sbjct: 148 ALQLN 152 >At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113 I +S E + D FG V + + K+++TG +GF +V F Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54 >At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113 I +S E + D FG V + + K+++TG +GF +V F Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54 >At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 495 Score = 29.1 bits (62), Expect = 3.3 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 44 E + + FG V + + K+++TG +GF +V F AD A A I H D ++ Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75 Query: 43 NVEWSKP 23 + + P Sbjct: 76 EAKKAVP 82 >At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 494 Score = 29.1 bits (62), Expect = 3.3 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = -1 Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 44 E + + FG V + + K+++TG +GF +V F AD A A I H D ++ Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75 Query: 43 NVEWSKP 23 + + P Sbjct: 76 EAKKAVP 82 >At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative identical to SP|O22682 Probable cysteine synthase, chloroplast precursor {Arabidopsis thaliana}, similar to SP|P31300 Cysteine synthase, chloroplast precursor {Capsicum annuum} Length = 404 Score = 28.7 bits (61), Expect = 4.4 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = -1 Query: 718 YKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED 551 + + +D+ VRT + VV K T +K KP P P T VAE+ Sbjct: 34 FSFHHDSSSSLAVRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEE 88 >At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 538 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 139 CKGFAYVHFKFRADAAKAIQSLNG 68 CKGFA+V FK DA + ++ G Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTG 255 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = -1 Query: 157 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68 E++TG +GF ++ F+ + A+ ++NG Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNG 282 >At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 404 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80 FG V ++ + +EK+TG +GF +V F A + +Q Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65 >At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1 GI:1279563 from [Medicago sativa] Length = 335 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/63 (20%), Positives = 30/63 (47%) Frame = -1 Query: 223 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL 44 +++ + FG + ++++ TG G+AY+ K A+ A + + G+D ++ Sbjct: 250 IKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVG 309 Query: 43 NVE 35 E Sbjct: 310 KAE 312 >At1g22870.1 68414.m02855 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 913 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -2 Query: 234 AILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 82 A+L L ++ TL K+ I T++R +D + LMCT + + KQ+ Sbjct: 524 ALLCLAELVQTLDKLAVTEILQTIQRCTAVDRSAPTLMCTLAIANAILKQY 574 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = -1 Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113 D+ + I +S E + D +G V + + ++++TG +GF ++ F Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = -1 Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113 D+ + I +S E + D +G V + + ++++TG +GF ++ F Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/51 (23%), Positives = 26/51 (50%) Frame = -1 Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113 D+ + I +S E + D +G V + + ++++TG +GF ++ F Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54 >At5g37040.1 68418.m04442 F-box family protein contains Pfam profile: PF00646 F-box domain Length = 242 Score = 27.9 bits (59), Expect = 7.7 Identities = 15/64 (23%), Positives = 30/64 (46%) Frame = +2 Query: 32 PFHVQNQMIITMTIK*LNCFRSICPELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVIN 211 P ++ +++ + + L+CFRS+C E ++ F +F+ KT + + Sbjct: 7 PLDLEEEILFRVPPRSLHCFRSVCKEWNALSRDKRLINKNFACAPPEFI--LKTRSNIYS 64 Query: 212 ISFN 223 IS N Sbjct: 65 ISVN 68 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,824,672 Number of Sequences: 28952 Number of extensions: 276510 Number of successful extensions: 980 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 924 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 974 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1682736544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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