Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i16r
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 143 1e-34
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 137 8e-33
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 52 3e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 52 3e-07
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 52 5e-07
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 50 2e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 5e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 7e-06
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 47 1e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 47 1e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 2e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 46 4e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 43 3e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 6e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.002
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 0.002
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.005
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.005
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.007
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.007
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.007
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.007
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.010
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.010
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.010
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.010
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.010
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 38 0.010
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.010
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.013
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 37 0.017
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.017
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.022
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.022
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.029
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.029
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.029
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.029
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.029
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.029
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.038
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.038
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.038
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.038
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.051
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.051
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.051
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.051
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 35 0.067
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.067
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 34 0.089
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 34 0.12
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.12
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.15
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.15
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.15
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.15
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.15
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.20
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.20
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.20
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.20
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.27
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 32 0.36
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.47
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.47
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.47
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.62
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.62
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.62
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.62
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.83
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.83
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.4
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 1.4
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 30 1.4
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.4
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.4
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.9
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 1.9
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 1.9
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.5
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 29 2.5
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 2.5
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.5
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.5
At1g71410.1 68414.m08247 protein kinase family protein contains ... 29 2.5
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.5
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 29 3.3
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 3.3
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 3.3
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.3
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.3
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 29 4.4
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 29 4.4
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 5.8
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 5.8
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 5.8
At1g22870.1 68414.m02855 protein kinase family protein contains ... 28 5.8
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 7.7
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 7.7
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 7.7
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof... 28 7.7
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 143 bits (346), Expect = 1e-34
Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
Frame = -1
Query: 745 ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATT 566
+NG+K V EYK++ ++KKVKI T +++KR ++K +R++W+KFGD+A ++ + T
Sbjct: 6 QNGVKKVIEYKFNEEDKKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEESS-SYLTM 64
Query: 565 NVAEDVFMQFIT---SKEESQRPDDGELDGLKPPSSNVIFKCRTCQ--GDHLTLYCPFKH 401
ED+ ++ I S E + L P + V+ CR CQ GDH T CP K
Sbjct: 65 RSTEDIILERIRAPGSNAEQSTVSGDSMSQLGKPGA-VLMVCRLCQKKGDHWTSRCPQKD 123
Query: 400 T-QIXXXXXXXXXXXXXXXXXASNKYIPPS---SAGRIPGRDQPPVRREDVTAIRISNLS 233
+ Y+PPS A R G R D ++R++NLS
Sbjct: 124 LLSLMDEPLTAETSTSTITGTGRAAYVPPSMREGADRKAGGSDMR-SRHDENSVRVTNLS 182
Query: 232 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH 53
D+ +L + FG V + ++A ++ T +GF +V F R DA +AI LNG+GYD+
Sbjct: 183 EDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDN 242
Query: 52 LILNVEWSKP 23
LIL VEWS P
Sbjct: 243 LILRVEWSTP 252
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 137 bits (331), Expect = 8e-33
Identities = 91/261 (34%), Positives = 137/261 (52%), Gaps = 20/261 (7%)
Frame = -1
Query: 745 ENGLKIVTEYKYDNDNKKVKIV---RTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNP 575
ENGLK EYK++++ KVKI R K+ ++K +R+ W KFGD+A+++ G +
Sbjct: 37 ENGLKTTIEYKFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSH- 95
Query: 574 ATTNVAEDVFMQFI----TSKEESQRPDDGELDGLKPPSSNVIFKCRTC--QGDHLTLYC 413
T E++ ++ T +ES+ DG L L + V+ CR C +GDH T C
Sbjct: 96 LTMVSTEEILLERPRAPGTKADESKATGDG-LSQLGKGGA-VLMVCRICHKKGDHWTSKC 153
Query: 412 PFKH----TQIXXXXXXXXXXXXXXXXXASNK--YIPPSSAGRIPGRDQPPV-----RRE 266
P+K T + + K Y+PPS G D+ V RR
Sbjct: 154 PYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRA---GADRSAVGSDMRRRN 210
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 86
D ++R++NLS E D+ +L FG V ++Y+A ++ TG +GF +V+F R DA +A
Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 85 IQSLNGHGYDHLILNVEWSKP 23
I LNG+GYD+LIL VEW+ P
Sbjct: 271 INKLNGYGYDNLILRVEWATP 291
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/98 (27%), Positives = 54/98 (55%)
Frame = -1
Query: 295 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 116
GR PP D ++ + N++ D+ L +G V +++ +++ TG +GFA+V
Sbjct: 5 GRSGPP-DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 115 FKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*KV 2
+K++ +A KA++ L+G D + V+++K N K+
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/98 (27%), Positives = 54/98 (55%)
Frame = -1
Query: 295 GRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVH 116
GR PP D ++ + N++ D+ L +G V +++ +++ TG +GFA+V
Sbjct: 5 GRSGPP-DISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 115 FKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*KV 2
+K++ +A KA++ L+G D + V+++K N K+
Sbjct: 64 YKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKI 101
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
I NL A +DI + G V +++ K TG KGFA+V F + DAA AI+ NG
Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
Query: 67 HGYDHLILNVEWSKP 23
H + + V+W+ P
Sbjct: 395 HMFGKRPIAVDWAVP 409
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+S L A +++ GPV + +L K + +GFA+V F + D +AI+ NG
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/85 (34%), Positives = 45/85 (52%)
Frame = -1
Query: 319 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGH 140
PS GR GR R+ T++ + NL + + D+ + FGPV +YL ++ TG
Sbjct: 21 PSPRGRYGGRS-----RDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGD 75
Query: 139 CKGFAYVHFKFRADAAKAIQSLNGH 65
+GF +V F ADAA A ++G+
Sbjct: 76 PRGFGFVQFMDPADAADAKHHMDGY 100
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/68 (32%), Positives = 39/68 (57%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + + NL+ + D+ + +G + + K+ G KGF +V+F+ DAA+A++
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVE 87
Query: 79 SLNGHGYD 56
SLNGH +D
Sbjct: 88 SLNGHKFD 95
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/102 (28%), Positives = 46/102 (45%)
Frame = -1
Query: 325 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKST 146
+P + A + PP T I ++NL E ++L K F + ++ K +T
Sbjct: 215 VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTE---EELKKAFSQLGEVIYVKIPAT 271
Query: 145 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20
KG+ YV FK R A +A+Q + G + + WSK P
Sbjct: 272 ---KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/102 (26%), Positives = 49/102 (48%)
Frame = -1
Query: 322 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 143
PPS P + ++ + + +LS EA + ++ FG V + +A +++
Sbjct: 81 PPSKGASSPSKKAV----QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17
+G YV FK RADA KA ++G D ++ ++ PP+
Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPR 178
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/102 (26%), Positives = 49/102 (48%)
Frame = -1
Query: 322 PPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 143
PPS P + ++ + + +LS EA + ++ FG V + +A +++
Sbjct: 81 PPSKGASSPSKKAV----QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17
+G YV FK RADA KA ++G D ++ ++ PP+
Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPR 178
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = -1
Query: 319 PSSAGRIPGRDQPPVRREDV-TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 143
PS GR G R D+ T++ + NL + + D+ + FGPV +YL ++ TG
Sbjct: 21 PSPRGRFGGS-----RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGH 65
+GF ++ F ADAA+A ++G+
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGY 101
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
+ + I NL A D+ D + FGP+ +YL + TG +GF +V +++ DAA+A++
Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 79 SLN 71
+N
Sbjct: 107 RMN 109
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = -1
Query: 295 GRDQPPVRREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 125
G D PV R + + + NLS A + L + G V + + +K TG +GF
Sbjct: 84 GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143
Query: 124 YVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20
+V A+ A Q NG+ ++ L V PP
Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Score = 34.7 bits (76), Expect = 0.067
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 253 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 312
Query: 67 HGYDHLILNVE--WSKPPQ 17
D + V ++PP+
Sbjct: 313 ADLDGRQIRVSEAEARPPR 331
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = -1
Query: 295 GRDQPPVRREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFA 125
G D PV R + + + NLS A + L + G V + + +K TG +GF
Sbjct: 84 GDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143
Query: 124 YVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20
+V A+ A Q NG+ ++ L V PP
Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
Score = 34.7 bits (76), Expect = 0.067
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 261 VGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320
Query: 67 HGYDHLILNVE--WSKPPQ 17
D + V ++PP+
Sbjct: 321 ADLDGRQIRVSEAEARPPR 339
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + +S LS E + D + FG + + + +K KGFA++ ++ +A KAIQ
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 79 SLNGHGYDHLILNVEWSK 26
++G D ++ VE +K
Sbjct: 137 GMHGKFLDGRVIFVEEAK 154
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/84 (26%), Positives = 43/84 (51%)
Frame = -1
Query: 280 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 101
P R + I +S + E DI + FG + L L ++ +G+ KG+A + ++ +
Sbjct: 88 PQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
Query: 100 DAAKAIQSLNGHGYDHLILNVEWS 29
+A AI ++NG ++V+W+
Sbjct: 148 EAQSAISAMNGAELLTQNVSVDWA 171
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71
I L E D+ DL + G + ++ L K++ +G KG+A+V FK + A KAI+ L+
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -1
Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83
V A+ + N+ + +L + G V K+ K G + F +VH+ R+ A KA+
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGK--GGKRDFGFVHYAERSSALKAV 348
Query: 82 QSLNGHGYDHLILNVEWSKP 23
+ + + L V +KP
Sbjct: 349 KDTERYEVNGQPLEVVLAKP 368
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = -1
Query: 283 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104
P + T + + NLS + +++ + FG + ++ G KGF +V+F+
Sbjct: 216 PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENS 274
Query: 103 ADAAKAIQSLNGHGYD 56
DAA+A+ +LNG +D
Sbjct: 275 DDAARAVDALNGKTFD 290
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 283 PPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104
P +R+ V I I NL + + FGP+ +A + S G KG+ +V +
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTD 183
Query: 103 ADAAKAIQSLNG 68
A AI LNG
Sbjct: 184 EAAQGAIDKLNG 195
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = -1
Query: 286 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 107
+PP + D T + I L + + +L FG + + K++ TG KG+ +V +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 106 RADAAKAIQSLNGHGYD--HLILNVEWSKPP 20
A A+Q++NG+ ++ L + + PP
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = -1
Query: 286 QPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 107
+PP + D T + I L + + +L FG + + K++ TG KG+ +V +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 106 RADAAKAIQSLNGHGYD--HLILNVEWSKPP 20
A A+Q++NG+ ++ L + + PP
Sbjct: 531 VQMANTAVQAMNGYRFEGRTLAVRIAGKSPP 561
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ-SLN 71
+ NL E + + + FGPV + L + TG CKGF ++ F + + +KA Q +LN
Sbjct: 269 VGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQIALN 327
Query: 70 G 68
G
Sbjct: 328 G 328
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + + A E D+ G V ++ + +EK +G KG+A+V F+ + AA+AI +L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 73 N 71
N
Sbjct: 154 N 154
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = -1
Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83
V A+ I NL + + L + G + K+ + K + +VH+ R +A+
Sbjct: 267 VKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326
Query: 82 QSLNGHGYDHLILNVEWSKP 23
++ + D +L+ +KP
Sbjct: 327 KNTERYEIDGHMLDCTLAKP 346
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
I LS E + D FG V ++ +A +K +G +GF +V F DA A +++G
Sbjct: 45 IGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDG 104
Query: 67 HG 62
G
Sbjct: 105 KG 106
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + L + E I +L++ FGP+ L K++ TG+ KG+A+ ++ + A +L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 73 NG 68
NG
Sbjct: 437 NG 438
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = -1
Query: 262 VTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 83
+T + S LS + + + L F P +L K++ T KGF ++ F+ DA KA+
Sbjct: 70 LTCVSNSGLSAYTTDQSLRQL---FAPFARLI--KDQQTQRPKGFGFITFESEDDAQKAL 124
Query: 82 QSLNGHGYDHLILNVEWSK 26
++LNG + ++ VE +K
Sbjct: 125 KALNGKIVNGRLIFVETAK 143
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -1
Query: 274 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104
+RED ++ I + +LS +A + D F + ++ TG +GF +V F+ +
Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199
Query: 103 ADAAKAIQSLNGHGYDHLILNVEWS 29
DA AI +NG + W+
Sbjct: 200 QDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = -1
Query: 319 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTG 143
P +G +P P R ++ N+ E + ++ GP+ L K+KS+
Sbjct: 47 PLPSGNLPPGFDPTTCR----SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS- 101
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29
+ +VH+ R A+ AI +LNG + V W+
Sbjct: 102 ----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDL--VKGFGPVHKLYLAKEKSTG 143
S GR + P T + + NLS + D+ L G G + ++ + ++K
Sbjct: 250 SEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--- 306
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGY 59
GF +V + +AA AIQ N +
Sbjct: 307 ---GFGFVRYNTHDEAALAIQMGNAQPF 331
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 59
FGPV +Y+ ++ +G +GFA+V F DA +A +S+N +
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/69 (27%), Positives = 40/69 (57%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ LS + E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+ +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAARTMMDRIE 360
Query: 67 HGYDHLILN 41
H D ++L+
Sbjct: 361 H--DGIVLD 367
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 184 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH--LILNVEWSK 26
P+ L L ++K T +GFA+VHF DA KA+++ N + IL V ++K
Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = -1
Query: 280 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 101
PV+ D + + L+ + +++++ +G + +Y+A + C+G+A+V F +
Sbjct: 200 PVQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKE 258
Query: 100 DAAKAIQSLNG 68
A AI++LNG
Sbjct: 259 MALAAIKALNG 269
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ +S + E + +G V K+ + +K KGFAYV F + +A KA+ LN
Sbjct: 25 VKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNA 84
Query: 67 HGYDHLILNVEWSKPPQNN 11
D ++ ++ +K ++N
Sbjct: 85 QLVDGRVVILDTTKAAKHN 103
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -1
Query: 223 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 47
+++D + D + FG + + K++STG +GF YV F DA A++ H + I
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRI 71
Query: 46 LNVEWSKPPQ 17
L V+ + P +
Sbjct: 72 LEVKVATPKE 81
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/77 (24%), Positives = 41/77 (53%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + NL E + FG + ++ L K+++ KG+A++ F + DA AI+++
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 73 NGHGYDHLILNVEWSKP 23
+ Y+ ++ ++ +KP
Sbjct: 102 DRRMYNGRMIYIDIAKP 118
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + + N++ A + ++ L FG + + L K K+ G G+A+V F + +A A +
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKK 727
Query: 79 SL-NGHGYD-HLILNVEWS 29
+L + H Y HL+L EW+
Sbjct: 728 ALASTHFYGRHLVL--EWA 744
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + NL E +++DL +GPV ++ L K G+A+V F+ DA AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 73 NGHGYDHLILNVE 35
+G+ +D L VE
Sbjct: 66 DGYDFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + NL E +++DL +GPV ++ L K G+A+V F+ DA AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 73 NGHGYDHLILNVE 35
+G+ +D L VE
Sbjct: 66 DGYDFDGHHLRVE 78
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+S LS + D FG + + ++ +G KGF +V + DA KA +N
Sbjct: 38 VSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNA 97
Query: 67 HGYDHLILNVEWSKP 23
D ++ V+ ++P
Sbjct: 98 KFLDGWVIFVDPARP 112
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
+++ + +L E+ + DL PVH L + ++ T G+AYV+F DA++A++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 79 SLN 71
SLN
Sbjct: 104 SLN 106
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = -1
Query: 301 IPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 122
+ RD P R + I NL + + FG + +A + G KG+ +
Sbjct: 119 LSNRD-PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGF 176
Query: 121 VHFKFRADAAKAIQSLNG 68
V F+ A AI LNG
Sbjct: 177 VQFEKEETAQAAIDKLNG 194
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + NL E +++DL +GPV ++ L K G+A+V F DA AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 73 NGHGYDHLILNVE 35
+G+ +D L VE
Sbjct: 66 DGYDFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + NL E +++DL +GPV ++ L K G+A+V F DA AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 73 NGHGYDHLILNVE 35
+G+ +D L VE
Sbjct: 66 DGYDFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + NL E +++DL +GPV ++ L K G+A+V F DA AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 73 NGHGYDHLILNVE 35
+G+ +D L VE
Sbjct: 66 DGYDFDGHRLRVE 78
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.7 bits (81), Expect = 0.017
Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Frame = -1
Query: 289 DQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 110
+ PPV+ + + I+ LS + E + +GFG + ++ + +K + KG+A++ +
Sbjct: 275 ESPPVKTKKLF---ITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYT 331
Query: 109 FRADAAKAIQSLNG---HGYDHLILNVEWSKPPQNN 11
A A++ +NG +G+ ++++V +KP + N
Sbjct: 332 TEEAAGTALKEMNGKIINGW-MIVVDVAKTKPFRQN 366
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + + NLS + ++ +G + + ++ G + F +V+F+ DAA+A++
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVE 283
Query: 79 SLNGHGYD 56
+LNG +D
Sbjct: 284 ALNGKKFD 291
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = -1
Query: 298 PGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYV 119
P D P + + +S L+ + E+ I + +GP+ +++L ++ T KG+A++
Sbjct: 126 PNND-PNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFI 184
Query: 118 HFKFRADAAKAIQSLNGHGYD--HLILNVEWSKPPQN 14
+ D A + +G D ++++VE + N
Sbjct: 185 EYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPN 221
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ NL E D+ + + FG V + + +++ TG CKGF +V F DA A+ +LNG
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NLNG 346
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = -1
Query: 274 RREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 95
RR + + I LS E + + G V + + ++ + KGF +V F +A
Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88
Query: 94 AKAIQSLNGHGYDHLILNVEWSKPPQN 14
KA+ NG + + V+++K Q+
Sbjct: 89 QKALMEFNGQQLNGRTIFVDYAKAKQS 115
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/89 (26%), Positives = 40/89 (44%)
Frame = -1
Query: 280 PVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRA 101
P+ I ++N+ A + + FG V K ++ + +TG G AY+ F R
Sbjct: 509 PLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFT-RK 567
Query: 100 DAAKAIQSLNGHGYDHLILNVEWSKPPQN 14
+AA+ SL+G + IL + QN
Sbjct: 568 EAAENALSLDGTSFMSRILKIVKGSNGQN 596
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ NL A + L + G V + + +K TG +GF +V ++ A Q NG
Sbjct: 95 VGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNG 154
Query: 67 HGYDHLILNVEWSKPP 20
+ D L V PP
Sbjct: 155 YELDGRPLRVNAGPPP 170
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + NLS + ++ L G V + + ++ +G KGF +V + + AI+SL
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 73 NGHGYDHLILNVE--WSKPPQ 17
+G D + V ++PP+
Sbjct: 266 DGADLDGRQIRVSEAEARPPR 286
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = -1
Query: 268 EDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 89
E T + + NL E + + FG + L +AK+++ C+G+A+V+F DA +
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARR 256
Query: 88 AIQSLNG 68
A +++NG
Sbjct: 257 AAETVNG 263
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 35.9 bits (79), Expect = 0.029
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = -1
Query: 325 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKS 149
I P +G +P P R ++ + N+ E + ++ G GPV L KEKS
Sbjct: 36 IEPIPSGNLPPGFDPSTCR----SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS 91
Query: 148 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29
+ + +VH+ R A AI SLNG + V W+
Sbjct: 92 S-----YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/86 (24%), Positives = 33/86 (38%)
Frame = -1
Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 137
S G+ + P T + + NL+ + D+ G + +E
Sbjct: 241 SEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAG----VIEEVRVQRD 296
Query: 136 KGFAYVHFKFRADAAKAIQSLNGHGY 59
KGF +V + +AA AIQ N H Y
Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHSY 322
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 157 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29
++ TG +GF +V F+ + DA AI + G + W+
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + + L + +A+I+ ++ +G V ++ E+ +G KG+ V F A AA +
Sbjct: 202 TMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 261
Query: 79 SLNGHGYDHLILNVEWSKP 23
+NG ++ V ++ P
Sbjct: 262 GMNGFIFNGKACVVAFASP 280
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 73 NG 68
NG
Sbjct: 421 NG 422
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 73 NG 68
NG
Sbjct: 421 NG 422
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
I + L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 73 NG 68
NG
Sbjct: 421 NG 422
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.5 bits (78), Expect = 0.038
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = -1
Query: 274 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLY----LAKEKSTGHCKGFAYVH 116
+RED ++ I + +LS +A + D F Y + ++ TG +GF +V
Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVS 199
Query: 115 FKFRADAAKAIQSLNGHGYDHLILNVEWS 29
F+ + DA AI +NG + W+
Sbjct: 200 FRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = -1
Query: 319 PSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTG 143
P +G +P P R ++ N+ E + ++ GP+ L K+KS+
Sbjct: 47 PLPSGNLPPGFDPTTCR----SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS- 101
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29
+ +VH+ R A+ AI +LNG + V W+
Sbjct: 102 ----YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDL--VKGFGPVHKLYLAKEKSTG 143
S GR + P T + + NLS + D+ L G G + ++ + ++K
Sbjct: 254 SEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--- 310
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGY 59
GF +V + +AA AIQ N +
Sbjct: 311 ---GFGFVRYNTHDEAALAIQMGNAQPF 335
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
E D+ + +G + + L ++K TG KGFA++ ++ + A+ +LNG
Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -1
Query: 274 RREDVTA---IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFR 104
+RED ++ I + +LS +A + F + ++ TG +GF +V F+ +
Sbjct: 136 QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQ 195
Query: 103 ADAAKAIQSLNGHGYDHLILNVEWS 29
DA AI +NG + W+
Sbjct: 196 QDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 34.3 bits (75), Expect = 0.089
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = -1
Query: 325 IPPSSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLA-KEKS 149
+ P +G +P P R ++ + N+ E + ++ GPV L K+KS
Sbjct: 41 LEPVPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS 96
Query: 148 TGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29
+ + +VH+ R AA AI SLNG + V W+
Sbjct: 97 S-----YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/86 (23%), Positives = 33/86 (38%)
Frame = -1
Query: 316 SSAGRIPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHC 137
S G+ ++ P T + + NL+ + D+ G + +E
Sbjct: 246 SEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAG----VIEEVRVQRD 301
Query: 136 KGFAYVHFKFRADAAKAIQSLNGHGY 59
KGF +V + +AA AIQ N Y
Sbjct: 302 KGFGFVRYNTHPEAALAIQMGNTQPY 327
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 196 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 196 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 34.7 bits (76), Expect = 0.067
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 253 IRISNL-SNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77
I + NL S E + D+ G + + L K KS G + FAY+ F+ +A AI
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITY 62
Query: 76 LNGHGYDHLILNVEWSKPP 20
+N D ++VE + PP
Sbjct: 63 VNKCFIDTYRISVEVADPP 81
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.067
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = -1
Query: 238 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--H 65
+ NF E DL + F ++ KS G+A+V+F+ DA AI+ L+
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 64 GYDHLILNVEWSK 26
GY+ L+VEW+K
Sbjct: 61 GYEKRRLSVEWAK 73
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 34.3 bits (75), Expect = 0.089
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ +L + +A+++ + +G V ++ EK++G KG+ V F A+ +LNG
Sbjct: 238 VGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNG 297
Query: 67 HGYDHLILNVEWSKP 23
+ ++ VE++ P
Sbjct: 298 YPFNGRPCVVEYASP 312
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T + + NLS + + + G+G V + +++ T +GF +V + ++A A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 79 SLNG 68
++G
Sbjct: 63 GMDG 66
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
E + D L K F +AK +K TG KG+ +V F AD A A++ +NG
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG 200
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 40 V 38
V
Sbjct: 79 V 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 40 V 38
V
Sbjct: 79 V 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 41
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 40 V 38
V
Sbjct: 79 V 79
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = -1
Query: 256 AIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77
++ + +LS E D+ D PV ++L + TG +AY++F A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 76 LNGHGYDHLILNVEWSK 26
LN + + WS+
Sbjct: 82 LNHSDLKGKAMRIMWSQ 98
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 56
E I+ FG V + ++ TG KGF +V FK AI +NG D
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -1
Query: 238 LSNFAVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ A D D L + F G V + ++ TG +GF +V F A+ AIQ+L+G
Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDG 103
Query: 67 HGYDHLILNVEWS 29
++ V ++
Sbjct: 104 RDLHGRVVKVNYA 116
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71
FG + + + +K+TG KG+ +V FK A +A Q++N
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ N+ A E + ++ GPV L ++ TG KG+ + +K A A ++L
Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQS 72
Query: 67 HGYDHLILNVEWSK 26
+ + L V++++
Sbjct: 73 YEINGRQLRVDFAE 86
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
+G V + +AKEK TG +GF +V F D KA++
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 62
+ D+ FG V + ++ +G +GF +V FK AI+ +NG G
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSG 71
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/77 (22%), Positives = 38/77 (49%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
I L+ + + D + +G + + + +K +G +GF ++ F + +AI ++NG
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNG 70
Query: 67 HGYDHLILNVEWSKPPQ 17
D + V+ ++P Q
Sbjct: 71 MDLDGRTITVDKAQPHQ 87
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 244 SNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
+NLS AD+++ K G V + + + G +GF +V F +A KA++
Sbjct: 302 ANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 232 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 345 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 402
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 232 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 336 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 393
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ LS ++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 56
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 56
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL 74
+ + N +D++ L FG V ++ + KS G+A+V+F+ DA AI+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KS-----GYAFVYFEDERDAEDAIRRT 55
Query: 73 NG--HGYDHLILNVEWSK 26
+ GY L+VEW+K
Sbjct: 56 DNTTFGYGRRKLSVEWAK 73
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = -1
Query: 301 IPGRDQPPVRREDVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 122
+ RD P R I I NL + + FG + +A + TG KG+ +
Sbjct: 123 LSNRD-PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGF 180
Query: 121 VHFKFRADAAKAIQSLNG 68
V F+ A AI LNG
Sbjct: 181 VQFEKEESAQAAIDKLNG 198
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK-AIQS 77
IR+ +L A A ++ + K FGP+ K + +A+V F+ ADAAK AIQ+
Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFE-EADAAKRAIQA 610
Query: 76 --LNGHGY 59
LN G+
Sbjct: 611 SPLNVDGH 618
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 133 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 26
G+A+V+F+ DA AI+ + GY L+VEW+K
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 241 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 65
N+SN +E +D +KG +H L L+ K +AD +++SLNGH
Sbjct: 766 NISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNGH 824
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T I + L + + D+ FG + + + K G +V F R +A +A++
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG------FVQFVNRPNAEEALE 359
Query: 79 SLNGHGYDHLILNVEWSKPPQN 14
LNG + + W + P N
Sbjct: 360 KLNGTVIGKQTVRLSWGRNPAN 381
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = -1
Query: 259 TAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
T I + L + + D+ FG + + + K G +V F R +A +A++
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG------FVQFVNRPNAEEALE 357
Query: 79 SLNGHGYDHLILNVEWSKPPQN 14
LNG + + W + P N
Sbjct: 358 KLNGTVIGKQTVRLSWGRNPAN 379
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 208 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 29
DDL FG +L K + C +V + RA A +A+ LNG + + W
Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 28 KPPQN 14
+ P N
Sbjct: 349 RSPSN 353
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 166 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
+ +++TG KG+ +V F ++ +A+ +NG
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -1
Query: 196 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 17
+ FG V + +K+TG K F +V + +A A AI +NG L V+ +
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
Query: 16 N 14
N
Sbjct: 430 N 430
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 142 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 32
H KG YVH++ A A QS+NG + +N E+
Sbjct: 333 HLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEF 369
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKG-FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 77
I + +L+ + + D K +G V + +++TG KG+ +V F + +A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 76 LNG 68
+NG
Sbjct: 216 MNG 218
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 136 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 20
KG +V F R A AI+SLNG + + W + P
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 253 IRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
I +SN+S + + FG + + L +K+TG KGFA ++ A KA++
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g71410.1 68414.m08247 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 909
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 234 AILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 82
A+L L ++ TL K A+ I T++R +D + LMCT + + KQ+
Sbjct: 524 ALLCLAELVQTLDKPAAIEILETIQRCTAVDRSAPTLMCTLAVANAILKQY 574
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 71
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -1
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 86
D ++ + N+ ++ + G VH++ + +K G KGFAYV F +A +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEF-VEVEAVQE 147
Query: 85 IQSLN 71
LN
Sbjct: 148 ALQLN 152
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113
I +S E + D FG V + + K+++TG +GF +V F
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 247 ISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113
I +S E + D FG V + + K+++TG +GF +V F
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 44
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 43 NVEWSKP 23
+ + P
Sbjct: 76 EAKKAVP 82
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 220 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 44
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 43 NVEWSKP 23
+ + P
Sbjct: 76 EAKKAVP 82
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative identical to SP|O22682 Probable
cysteine synthase, chloroplast precursor {Arabidopsis
thaliana}, similar to SP|P31300 Cysteine synthase,
chloroplast precursor {Capsicum annuum}
Length = 404
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 718 YKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED 551
+ + +D+ VRT + VV K T +K KP P P T VAE+
Sbjct: 34 FSFHHDSSSSLAVRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEE 88
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 139 CKGFAYVHFKFRADAAKAIQSLNG 68
CKGFA+V FK DA + ++ G
Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTG 255
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 157 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 68
E++TG +GF ++ F+ + A+ ++NG
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNG 282
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 190 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 80
FG V ++ + +EK+TG +GF +V F A + +Q
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = -1
Query: 223 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL 44
+++ + FG + ++++ TG G+AY+ K A+ A + + G+D ++
Sbjct: 250 IKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVG 309
Query: 43 NVE 35
E
Sbjct: 310 KAE 312
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 234 AILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 82
A+L L ++ TL K+ I T++R +D + LMCT + + KQ+
Sbjct: 524 ALLCLAELVQTLDKLAVTEILQTIQRCTAVDRSAPTLMCTLAIANAILKQY 574
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -1
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113
D+ + I +S E + D +G V + + ++++TG +GF ++ F
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -1
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113
D+ + I +S E + D +G V + + ++++TG +GF ++ F
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = -1
Query: 265 DVTAIRISNLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 113
D+ + I +S E + D +G V + + ++++TG +GF ++ F
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g37040.1 68418.m04442 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 242
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +2
Query: 32 PFHVQNQMIITMTIK*LNCFRSICPELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVIN 211
P ++ +++ + + L+CFRS+C E ++ F +F+ KT + +
Sbjct: 7 PLDLEEEILFRVPPRSLHCFRSVCKEWNALSRDKRLINKNFACAPPEFI--LKTRSNIYS 64
Query: 212 ISFN 223
IS N
Sbjct: 65 ISVN 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,672
Number of Sequences: 28952
Number of extensions: 276510
Number of successful extensions: 980
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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