Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i16f
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical pr...    73   2e-13
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    35   0.043
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   2.1  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   2.1  
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   4.9  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   4.9  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical
           protein F22B5.2 protein.
          Length = 256

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
 Frame = +1

Query: 145 SWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 324
           SWA+ VE D     P  +   +G +  T +  + D  + K+V  +K+  + V K +A RK
Sbjct: 9   SWAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKRVPKVVADRK 64

Query: 325 TWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCR 504
            W KFG    +  GP  ATT VAE+V MQF  ++   Q  D  E       +S     CR
Sbjct: 65  KWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQEDKQTAKTTSRE--HCR 122

Query: 505 TCQG-DHLTLYCPFK 546
            C+G DH + +CP+K
Sbjct: 123 HCKGNDHWSTHCPYK 137


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 151 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKT 327
           AD   I +GV P   E+ + NGL  V E  Y+ND +K    +T   + +V   S  K K 
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380

Query: 328 WSKFGDSASD 357
             +  D  SD
Sbjct: 381 QEESDDEESD 390


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 268 VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 396
           +  YKI    +S  + KRKT  KFGD A D P      NP TT+  E
Sbjct: 6   ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 154 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTY-KIEKRVVSKSIAKRKTW 330
           D V+ID+ +    +E+V+   +IVT++    +  +V I+  Y K+ ++   K IA R+ W
Sbjct: 90  DLVDIDEIIPKTKTEIVDEKEQIVTDF----ERYRVLIINDYKKVSEKHYLKKIADREFW 145


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 16   PAKQVEHSIKPTYQLSLHTINCKIAIGV*NICFDMPVAEEFQ 141
            P ++ E S++PT + ++HT+     +     CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 16   PAKQVEHSIKPTYQLSLHTINCKIAIGV*NICFDMPVAEEFQ 141
            P ++ E S++PT + ++HT+     +     CF+ P+A E +
Sbjct: 2477 PTQESEQSLEPTSEKNVHTVTETTTVT--RECFEEPIASELE 2516


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +1

Query: 154 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWS 333
           D +   +    PPS      LK +   K D  +K+ K   + K  KR+ S++I   K WS
Sbjct: 47  DSLRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103

Query: 334 KFGDSASDKPGPNPATTNVAEDV 402
           +F          +  T  + ED+
Sbjct: 104 QFNRREDKTDYLDDETMQILEDL 126


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
            F29C12.3 protein.
          Length = 1631

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 15   SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 116
            +S+ S  +   YL+++ S+D    S+W I+YM R
Sbjct: 920  TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 196 EVVENGLKIVTEYKYDNDNKKVKIV 270
           + V+   K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 196 EVVENGLKIVTEYKYDNDNKKVKIV 270
           + V+   K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431


>U40954-3|AAL00885.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK813.4a protein.
          Length = 171

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 501 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 355
           T+K NI   W++ ++  +   L L   GD  ++++DI   I+  R RP++V
Sbjct: 108 TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 156


>U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical
           protein ZK813.4b protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 501 TLKDNIAGWWLKTIKLPVIWALTLFLTGD--ELHEDIFSYISSSRVRPRLV 355
           T+K NI   W++ ++  +   L L   GD  ++++DI   I+  R RP++V
Sbjct: 89  TIKRNII--WIEVMEGDIAQTLGLVTVGDVHKIYDDICDIINKHRERPKIV 137


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
            protein F29C12.3 protein.
          Length = 1631

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 15   SSKTSGAFDQTYLSIITSYDKLQNSNWCIKYMFR 116
            +S+ S  +   YL+++ S+D    S+W I+YM R
Sbjct: 920  TSEASRKWTTRYLAVLASFDLPTFSDWGIQYMLR 953


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +1

Query: 154 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK----- 318
           DEVE+    +      V+N  KIV + K++    + + +R  K+E  ++ K IAK     
Sbjct: 331 DEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSESQ-MRRKKVEIMLIRKEIAKAQKQL 389

Query: 319 RKTWSKFG 342
           R+   KFG
Sbjct: 390 REALGKFG 397


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +1

Query: 205 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 372
           +N  K + E K ++ +K +    K V+   +  ++ +K  + +  WSK  +   ++  P 
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224

Query: 373 PATTNVAEDVFMQFITSKEESQRPDD 450
           P    V E+        +EE +  ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 525 QMVSLTCTTLKDNIAGWWLKTIKLP 451
           Q V  TC   K  + G  LKTIKLP
Sbjct: 91  QRVQCTCCEYKKELVGCHLKTIKLP 115


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +1

Query: 205 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 372
           +N  K + E K ++ +K +    K V+   +  ++ +K  + +  WSK  +   ++  P 
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224

Query: 373 PATTNVAEDVFMQFITSKEESQRPDD 450
           P    V E+        +EE +  ++
Sbjct: 225 PVIEPVEEEETAASEGEEEEEEADEE 250


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/79 (20%), Positives = 35/79 (44%)
 Frame = +1

Query: 241  DNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFIT 420
            + +N+  +     + +K+ V K+  K K   +     +++PGP P +    E   ++ + 
Sbjct: 1421 EEENRMKERFTKREAKKKAVEKAKEKEKKEHRKEPKKANEPGPAPKSEKAVEKA-VEKVE 1479

Query: 421  SKEESQRPDDGELDGLKPP 477
             K +S +    +    KPP
Sbjct: 1480 KKPKSPQKPPAKPTAQKPP 1498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,880
Number of Sequences: 27780
Number of extensions: 264705
Number of successful extensions: 872
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)