Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i15r
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             202   3e-52
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     195   3e-50
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   6e-14
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)             46   4e-05
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   1.0  
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)                 30   1.8  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 28   9.4  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  202 bits (492), Expect = 3e-52
 Identities = 104/167 (62%), Positives = 121/167 (72%), Gaps = 4/167 (2%)
 Frame = -2

Query: 745 YRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 566
           YR  +E EL E+C  VL LL+  LIP A + ESKVFYLKMKGDYYRY  EVA  + R  V
Sbjct: 61  YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREV 120

Query: 565 VEDSQKAYQDAFEISKA--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDA 392
           V+ + KAY +A EI++   K+ PT PIRLGLALNFSVFYYEI+    +AC LAK+AFDDA
Sbjct: 121 VQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDA 180

Query: 391 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 257
           IAELDTL+ED YKDSTLIMQLLRDNLT+     Q   +  E AE GD
Sbjct: 181 IAELDTLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227



 Score =  138 bits (335), Expect = 3e-33
 Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 4/103 (3%)
 Frame = -2

Query: 571 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 401
           +VVE + +AY++A E ++    K+ PT PIRLGLALNFSVF+YEI  + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266

Query: 400 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 275
           DDAIAELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 267 DDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  195 bits (476), Expect = 3e-50
 Identities = 94/162 (58%), Positives = 121/162 (74%), Gaps = 3/162 (1%)
 Frame = -2

Query: 751 KEYRVKVEKELREICYDVLGLLDKHLIPKAS---NPESKVFYLKMKGDYYRYLAEVATGE 581
           K+YR  +  EL   C +VL +L+ +L+       N E+KVFYLKM+GDY+RYL EVA G+
Sbjct: 86  KKYREDITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAEGD 145

Query: 580 TRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 401
           +R   +E S++AY+DA      ++ P+HPIRLGLALNFSVFYYEI N P +AC+LAK+AF
Sbjct: 146 SRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVFYYEIENKPPEACKLAKEAF 204

Query: 400 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 275
           DDAIA LD L ++SYKDSTLIMQLLRDNLTLWTS+   +G +
Sbjct: 205 DDAIAVLDNLKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 32/57 (56%), Positives = 47/57 (82%)
 Frame = -2

Query: 751 KEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 581
           K+Y+  +EKEL+++C +VLG+L++ LIP A + E+KVFY K+KGDYYRYLAE + G+
Sbjct: 160 KKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLKGDYYRYLAEFSHGQ 215


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = -2

Query: 751 KEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM 626
           + YR  +E+EL+ IC ++L LLD  LI  + + ESKVFY K+
Sbjct: 84  RNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFYNKI 125


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 400 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 263
           DD   + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -2

Query: 700 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEIS 521
           +LGL++ H+ PK+ +   ++F      +Y+ +L  V    T+   +E +   Y    + S
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173

Query: 520 KA 515
           KA
Sbjct: 174 KA 175


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 592  ATGETRHS-VVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 437
            A GETR    + D+ +A +D     KA+ Q     +   ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 457 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 284
           YY I  +  K      Q FDD    +   +ED+ +D+T  ++L+       T+D  GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,184,179
Number of Sequences: 59808
Number of extensions: 458715
Number of successful extensions: 1397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)