Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i11f
(581 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-3|AAK27862.1| 82|Caenorhabditis elegans Hypothetical ... 51 5e-07
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 31 0.79
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 30 1.4
Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40413-6|AAK39173.2| 356|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF149288-1|AAF99087.1| 644|Caenorhabditis elegans KRP85 protein. 27 9.7
AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical ... 27 9.7
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 27 9.7
AC024801-1|AAK68513.1| 646|Caenorhabditis elegans Kinesin-like ... 27 9.7
>AC087079-3|AAK27862.1| 82|Caenorhabditis elegans Hypothetical
protein Y37E3.4 protein.
Length = 82
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +1
Query: 208 MTRGNQRDLARAKNQKKQVEMQKKKNASEK---TGLSLQERKHRDA 336
MTRGNQRDLAR KNQKK + +K++ AS + GLS+ R +RDA
Sbjct: 1 MTRGNQRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDA 46
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 223 QRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 336
+RD R K +K+ E +KKK+A EK +E+K +DA
Sbjct: 393 ERDERRTK--RKEEEEKKKKDAEEKKKKDAEEKKKKDA 428
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 202 IRMTRGNQRDLARAKNQKKQ--VEMQKKKNASEKTGLSLQERKHRDA 336
++M R +R + + +KK+ E +KKK+A EK ++ K +DA
Sbjct: 390 LKMERDERRTKRKEEEEKKKKDAEEKKKKDAEEKKKKDAEDEKKKDA 436
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 211 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 330
+R + + +KK++E KK+ A +K LSL + K++
Sbjct: 246 SRETVAETEKMNGEKKKIEKDKKRKAGDKADLSLDDGKNK 285
>Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical
protein F19C6.2b protein.
Length = 449
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 217 GNQRDLARAKNQKKQVEMQKKKNASEK 297
GN+ D + AK KKQV +KK+NA K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327
>Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical
protein F19C6.2a protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 217 GNQRDLARAKNQKKQVEMQKKKNASEK 297
GN+ D + AK KKQV +KK+NA K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373
>U40413-6|AAK39173.2| 356|Caenorhabditis elegans Hypothetical
protein C18B2.2 protein.
Length = 356
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 202 IRMTRGNQRDLARAKNQKKQVE-MQKKKNASEKTGLSL 312
+ M+ ++ L R N + ++ +QKK NASE TG SL
Sbjct: 148 MNMSEWDKESLCRGDNTFRHLKSLQKKYNASEMTGWSL 185
>AF149288-1|AAF99087.1| 644|Caenorhabditis elegans KRP85 protein.
Length = 644
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 220 NQRDLARAKNQKKQVEMQKKKNASEK 297
NQ + AK Q+++VEM+KK+ E+
Sbjct: 368 NQEEAWEAKMQEREVEMEKKRKILEE 393
>AF003390-2|AAP31432.1| 341|Caenorhabditis elegans Hypothetical
protein R155.1b protein.
Length = 341
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 340 IQHPCVFFLVGINQSFHWHFSFFAFLLVSFGFWRGPSPSDYHESF 206
I P ++ + S+ F+F F L+ +W GP S Y F
Sbjct: 260 ISRPFIWIFGKLTISYSMGFAFLMFGLIKTKYWIGPVKSLYFIGF 304
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 340 IQHPCVFFLVGINQSFHWHFSFFAFLLVSFGFWRGPSPSDYHESF 206
I P ++ + S+ F+F F L+ +W GP S Y F
Sbjct: 392 ISRPFIWIFGKLTISYSMGFAFLMFGLIKTKYWIGPVKSLYFIGF 436
>AC024801-1|AAK68513.1| 646|Caenorhabditis elegans Kinesin-like
protein protein 20 protein.
Length = 646
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 220 NQRDLARAKNQKKQVEMQKKKNASEK 297
NQ + AK Q+++VEM+KK+ E+
Sbjct: 370 NQEEAWEAKMQEREVEMEKKRKILEE 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,939
Number of Sequences: 27780
Number of extensions: 190022
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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