Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i09r
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0966 - 23016581-23016772,23017242-23017427,23017537-230176...    28   8.5  

>07_03_0966 -
           23016581-23016772,23017242-23017427,23017537-23017653,
           23017930-23018084,23018785-23019039,23019226-23019304,
           23019503-23019714,23020644-23020698
          Length = 416

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 592 DLKSKHKFESQIITRTKTPLQTSNVKTFYIG 684
           DL+ KH+F+ + +T T  PL+T  +    IG
Sbjct: 19  DLREKHQFDLERLTLTSQPLRTLALFALAIG 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,898
Number of Sequences: 37544
Number of extensions: 227304
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)