Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i09r
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.8  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   5.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.8  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 409 SPKTMARFKISTTKLHSK 462
           +PK   RFK+   K HSK
Sbjct: 284 APKQTVRFKVHDPKAHSK 301


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 36  NYTSLNDYSNNRPVILRALQDGINFTQFI 122
           NY++ N+Y+NN     + L   IN+ + I
Sbjct: 90  NYSNYNNYNNNYNNYNKKLYYNINYIEQI 118


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 389 LYFKCEIPRKPWHGL 433
           L F+  +P +PWHG+
Sbjct: 75  LRFRKPLPIEPWHGV 89


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 389 LYFKCEIPRKPWHGL 433
           L F+  +P +PWHG+
Sbjct: 75  LRFRKPLPIEPWHGV 89


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 137 IHLKRKRTTKKIISFKHLKEI 199
           IHLK  +  K    +K LKEI
Sbjct: 112 IHLKSSKLIKCFAKYKTLKEI 132


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 36  NYTSLNDYSNNRPVILRALQDGINFTQFI 122
           NY + N+Y+NN     + L   IN+ + I
Sbjct: 333 NYNNYNNYNNNYNNNYKKLYYNINYIEQI 361


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 221 FSNKDTEIGDSKTCLCQ 271
           + ++  E GDSK  LCQ
Sbjct: 262 YEDEFDEFGDSKCSLCQ 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,727
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)