Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i09f
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.0  
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    29   3.1  
01_02_0048 - 10626467-10627498,10628522-10628617                       28   4.1  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    27   9.5  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 361 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 269
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 135 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 254
           +A  I LP E+  A LG  V   HD P APG   +    V
Sbjct: 1   MASHIILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 135 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQN 272
           LA+ + + AE   A  G   P P  + QAP  PE+ A     T  N
Sbjct: 228 LAVALGVDAEVPSANHGADEPEPLPMLQAPPPPEDMAPESSSTATN 273


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 521 FFSSFCLVFWYNFSW 477
           FFS+F L+FW  +SW
Sbjct: 581 FFSTFLLLFWTIYSW 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,735
Number of Sequences: 37544
Number of extensions: 166533
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)