Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i07r
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    66   4e-12
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    28   1.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.1  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = -3

Query: 771 THLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPSGNFIKA 598
           + +PGY+ N  +  + G++ I  V+VND +V  AW    +   +  V  +AD +G F KA
Sbjct: 45  SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKA 104

Query: 597 LDLGTNLPP-LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 457
            D G +    LG  RSKR++ V+ + KV  + +E + T +  S ADK+
Sbjct: 105 FDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 235 QISRQFSWHFDCALVTFNTAFASIYLGS*TPREKDKLR 348
           Q++R + WH D AL  +N    +  L    P+    LR
Sbjct: 175 QVTRFYRWHIDAALYDYNPPVVTTLLAVNAPQGTQTLR 212


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 54  KMLLYIF-EVYSYINSKSKRSQTILFKSIVRCVRLINSVALYVKLLS*QPKQINNMK 221
           ++ +Y+F E+Y   +  S  +  ++ +S+VR  +   +++LY K+++ +PK   + K
Sbjct: 265 QIAIYMFDEMYRTHHWSSFTACRLMIESLVRQNKFEEAISLYKKIIAKRPKIARDKK 321


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 759 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 616
           GY+ +++ L  +G  + +   V++P   A W  +H     N +  + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,275
Number of Sequences: 5004
Number of extensions: 61162
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)