Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i07r
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 81 7e-16
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 80 2e-15
06_03_0811 + 24830496-24831194 73 3e-13
02_01_0691 - 5167260-5167937 67 2e-11
01_06_0928 + 33085403-33089224 32 0.44
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.77
11_03_0128 - 10437407-10438049,10438097-10438272 29 3.1
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 3.1
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 3.1
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.1
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 9.5
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 81.4 bits (192), Expect = 7e-16
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+PG++ A++LK+ GV +I+ VSVNDP+VM AW + V+ LAD G + KAL L
Sbjct: 55 HVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGL 114
Query: 588 GTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDG 490
+L G G RS+RF+++ + KV N+E G
Sbjct: 115 ELDLSEKGLGIRSRRFALLADNLKVTVANIEEGG 148
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 80.2 bits (189), Expect = 2e-15
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+P Y N DKLK+ GV ++CVSVNDPY + W + K + D G+F K+LDL
Sbjct: 90 HVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDL 149
Query: 588 GTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 499
+L L G RS R+S + D K++ NVE
Sbjct: 150 EVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>06_03_0811 + 24830496-24831194
Length = 232
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+PG+V A +L++ GV + CVSVND +VM AW +V +L+D +G +A+ +
Sbjct: 123 HVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGV 182
Query: 588 GTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 454
+L P G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 183 ELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLK 230
>02_01_0691 - 5167260-5167937
Length = 225
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT-KGKVRMLADPSGNFIKALD 592
HLPG+++ A +L + GV I CVSVND +VM AW V +L+D + +AL
Sbjct: 115 HLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALG 174
Query: 591 LGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 454
+ +L P+G G RS+R++++ D V+ LN+E G + S + +K
Sbjct: 175 VEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLK 223
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 32.3 bits (70), Expect = 0.44
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +2
Query: 470 REQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKLPLGSASIRTFPL 649
+E+D + T +W + + K SG LVP S L +L L S SI L
Sbjct: 900 KERDEALVKEDTIEAWLCCHKERMRFIYSAK--SGLPLVPPS-GLCELYLSSCSITDGAL 956
Query: 650 VLC*APQAAITYGSLTDTHTISATPSD 730
LC ++ SLT+ T++ PS+
Sbjct: 957 ALCIGGLTSLRELSLTNIMTLTTLPSE 983
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +3
Query: 465 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 602
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 626 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 522
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 484 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 639
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 272 AQSKCQENCREICVNSRFHVIY--LLRLLAEQFYV*GNAINQ 153
+QS CQE R++C + VIY L +L + Y A N+
Sbjct: 767 SQSACQEGIRQLCETFAYKVIYNDLSHVLLDSLYAGDTASNR 808
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 573 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 457
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +1
Query: 556 AETSERRQIGAQVQSLDEVAAGIG*HTHLSFSVVLSSPSRHHIRVINRHAHYFSNSIRFQ 735
A+ + Q+ Q+++ E+ + ++ +L + + +R N H HYFS I +
Sbjct: 2349 AQQMNQSQLDVQIETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYL 2408
Query: 736 F 738
F
Sbjct: 2409 F 2409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,707,782
Number of Sequences: 37544
Number of extensions: 423773
Number of successful extensions: 1019
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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