Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i07r
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   7e-16
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          71   8e-13
SB_58747| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   5.5  
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = -3

Query: 735 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP-LGGF 559
           +KS GV  + C++VNDP+VM+AWG  +  +GK             A+DL  +  P LG  
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK-------------AVDLELDATPFLGNI 99

Query: 558 RSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 457
           RSKR++M++ D  V+ L+VEPDGTGL+CSL++ I
Sbjct: 100 RSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133


>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
 Frame = -3

Query: 771 THLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALD 592
           THLP Y + A   K+ GV +I+C+SVND +VM +W A    +  +  + D +G F + + 
Sbjct: 53  THLPRYNELAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGNGEFSEGMG 111

Query: 591 LGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLAD 463
           +  +   LG G RS R+SM++ D  ++ + +EPD  G    ++D
Sbjct: 112 MLVDKSDLGFGKRSWRYSMLVKDGVIEKMFIEPDVPGDPFKVSD 155


>SB_58747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 117 TILFKSIVRCVRLINSVALYVKLLS 191
           T LF +++RC+R +N++++   LLS
Sbjct: 29  TELFPTVIRCMRALNAISVATSLLS 53


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 606 IKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDL 508
           ++A+DL TN+  +G  R+  F +  VD +V+D+
Sbjct: 80  VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 660  QHNTKGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQ 514
            QHNT+ K+ ++A+ +  +    + G +   L     KR+S  +VDSK +
Sbjct: 908  QHNTRVKLPVVAERTAGYDDDEESGEDEDVLSRNAIKRYSQQLVDSKTK 956


>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 494 SGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRALMKL 613
           SG  + + T+++  T+EN++   PP G   V R R + +L
Sbjct: 3   SGCGYETTTMITNWTVENVIPLPPPEGH--VEREREIYEL 40


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 646 FSVVL-SSPSRHHIRVINRHAHYFSNSIRFQFICVLYVS 759
           FS++L SSPS++H  ++    H+ ++   F +I ++ +S
Sbjct: 261 FSIILTSSPSKYHRHLVPSPFHHDNSLHHFPYISIINIS 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,821,649
Number of Sequences: 59808
Number of extensions: 461315
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)