Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i07r
(773 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong s... 91 1e-18
At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong s... 88 5e-18
At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong s... 88 7e-18
At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar ... 76 3e-14
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 73 3e-13
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 64 1e-10
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 34 0.12
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 34 0.12
At1g18740.1 68414.m02337 expressed protein 31 1.1
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 29 2.6
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara... 29 4.5
At4g32750.1 68417.m04660 expressed protein 28 6.0
At3g55060.1 68416.m06115 expressed protein contains weak similar... 28 6.0
At5g07360.1 68418.m00840 amidase family protein low similarity t... 28 7.9
>At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 90.6 bits (215), Expect = 1e-18
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+PG+++ A++LKS GV EI+C SVNDP+VM AWG + V+ +AD SG + L L
Sbjct: 55 HVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGL 114
Query: 588 GTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 457
+L G G RS+RF++++ D KV NVE G + S AD I
Sbjct: 115 ELDLKDKGLGVRSRRFALLLDDLKVTVANVESGGE-FTVSSADDI 158
>At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 88.2 bits (209), Expect = 5e-18
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Frame = -3
Query: 771 THLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALD 592
+H+PG++ A++LKS G+ EI+C SVNDP+VM AWG + V+ +AD SG + L
Sbjct: 54 SHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLG 113
Query: 591 LGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 454
L +L G G RS+RF++++ + KV NVE G S D +K
Sbjct: 114 LELDLKDKGLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILK 160
>At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 87.8 bits (208), Expect = 7e-18
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Frame = -3
Query: 771 THLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALD 592
+H+PG++ A++LKS G+ EI+C SVNDP+VM AWG + V+ +AD SG + L
Sbjct: 54 SHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLG 113
Query: 591 LGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 454
L +L G G RS+RF++++ + KV NVE G S D +K
Sbjct: 114 LELDLKDKGLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILK 160
>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to
type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
(alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
Length = 234
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+PG+V A +L+S G+ I C+SVND +VM AW +V +L+D +G F L +
Sbjct: 125 HVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGV 184
Query: 588 GTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIK 454
+L P+G G RS+R++++ D V+ LN+E G + S D +K
Sbjct: 185 ELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLK 232
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+P Y + DK K+ G+ ++CVSVNDP+ + W + K + D G F K+L L
Sbjct: 93 HVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGL 152
Query: 588 GTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 499
+L L G RS+R+S + D KV+ +NVE
Sbjct: 153 DKDLSAALLGPRSERWSAYVEDGKVKAVNVE 183
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 64.1 bits (149), Expect = 1e-10
Identities = 37/107 (34%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Frame = -3
Query: 768 HLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDL 589
H+ G+++ A++LKS+GV EI+C+S +DP+++ A + V+ + D SG +I+ L L
Sbjct: 55 HVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSENKH----VKFVEDGSGEYIQLLGL 110
Query: 588 GTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIKV 451
+ G G RS+ F++++ + KV +NV G+G CSL +K+
Sbjct: 111 ELEVKDKGLGVRSRGFALLLDNLKVIVVNV---GSGGDCSLFQLMKM 154
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 679 DGGLGSSAQH*RKGAYASRSQRQLHQGSGPGHQSAAARRFPLQKVLDGHR*QQGPRSECG 500
DGG ++ KG + +RQ HQG G GH +A++ P ++ + GPR G
Sbjct: 338 DGGNHQKDKNGNKGRVVGQGRRQNHQG-GNGHGTASSSSHPNYHPVEVSKRPPGPRMPDG 396
Query: 499 AR 494
R
Sbjct: 397 TR 398
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 679 DGGLGSSAQH*RKGAYASRSQRQLHQ-GSGPGHQSAAARRFPLQKVLDGHR*QQGPRSEC 503
DGG ++ KG + +RQ HQ G+G GH +A++ P ++ + GPR
Sbjct: 338 DGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPD 397
Query: 502 GAR 494
G R
Sbjct: 398 GTR 400
>At1g18740.1 68414.m02337 expressed protein
Length = 382
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 455 LILSAREQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRA 601
+++SA + RP+ G R+ L + I L E+ PSG L R+R+
Sbjct: 138 IVISALDSHRPIGEGQLRRAKKALIDLAIGMLDEKDHPSGTNLAHRNRS 186
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -3
Query: 705 CVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIV 529
C + +V ++W NT+ + +L + I DL TNL P L + R +
Sbjct: 1636 CSQATEDFVGSSWDELKNTRQALVLLVTEQKSTITYDDLTTNLCPALSTQQLYRICTLCK 1695
Query: 528 DSKVQDLNVEPD 493
+D NV PD
Sbjct: 1696 IDDHEDQNVSPD 1707
>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
[Arabidopsis thaliana] GI:4894914; contains Pfam profile
PF02416: mttA/Hcf106 family
Length = 260
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 620 PAATSSRLWTWAPICRRSEVSAPKGSRWSSLTARSK 513
P T S L+++ P+ R + S P S W SL S+
Sbjct: 15 PTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSR 50
>At4g32750.1 68417.m04660 expressed protein
Length = 293
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 328 REKDKLRKV-RASLKVTNAGKIALISFLCYLILQCDITHCLLHF 456
+E + LR+ RA +K+ +++++FLC++I C I + F
Sbjct: 16 QEYESLREEDRAWIKLQRPTLVSIVAFLCFVIFTCTIVSLKIVF 59
>At3g55060.1 68416.m06115 expressed protein contains weak similarity
to intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae];
expression supported by MPSS
Length = 896
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 170 LIRKIAQLTTEADK*HENEN 229
L R++A+LTT ADK HE N
Sbjct: 464 LERRVAELTTTADKLHEENN 483
>At5g07360.1 68418.m00840 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 659
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +2
Query: 569 SGGRLVPRSRALMKLPLGS--ASIRTFPLVLC*APQAAITYGSLTDTHTISATPSDFSLS 742
S G S ++ +GS A T+P C T+GS+ T +S + S L
Sbjct: 349 SAGPAASTSAGMVPFAIGSETAGSMTYPAARCGITALRPTFGSVGRTGVMSISESLDKLG 408
Query: 743 AFCTYPGKC 769
FC C
Sbjct: 409 PFCRTAADC 417
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,770,594
Number of Sequences: 28952
Number of extensions: 327209
Number of successful extensions: 742
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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