Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i06r
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) 134 3e-32
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 27 3.7
SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6) 27 5.0
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21) 27 6.5
SB_55137| Best HMM Match : hATC (HMM E-Value=0.059) 26 8.7
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 26 8.7
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14) 26 8.7
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 26 8.7
>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
Length = 115
Score = 134 bits (323), Expect = 3e-32
Identities = 68/115 (59%), Positives = 78/115 (67%)
Frame = -3
Query: 355 PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKEV 176
PPKKD K AK+PQ LNN VLFDK TY+KLYKEV
Sbjct: 1 PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59
Query: 175 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 11
P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60 PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 31.1 bits (67), Expect = 0.30
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 51 WCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 230
WC +RPF LSS++ L R + ++ GV GT S G++ W
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198
Query: 231 NLSRTFPL 254
+ +R P+
Sbjct: 2199 SRTREMPV 2206
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 177 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 260
+SL+ G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277
>SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)
Length = 538
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 283 HRILPSSSVFFEAVWPKPSRPSWAASLNWKD 375
H ++P+ + F++VW + R S+ A L WKD
Sbjct: 301 HLVIPTL-LEFDSVWLRLFRHSYKAKLLWKD 330
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 324 NSLKKHRRRRKDPVAAKPRRRSGPK 250
N KH ++K PV P+R GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328
>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
Length = 683
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 222 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 347
WL + TFPL + + + P DP ++C +F G +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197
>SB_55137| Best HMM Match : hATC (HMM E-Value=0.059)
Length = 619
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 283 HRILPSSSVFFEAVWPKPSRPSWAASLNWKD 375
H ++P+ + F +VW + R S+ A L WKD
Sbjct: 301 HHVIPTL-LEFGSVWLRLFRHSYKAKLLWKD 330
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 362 KDAAQEGREGFGQTASKNTEEE-GRIRWRQSQEE 264
K+ ++ R AS ++E+E RIRWRQ ++E
Sbjct: 245 KEGSRSRRRSPDPYASSDSEDERDRIRWRQLEKE 278
>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1453
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 327 PNSLKKHRRRRKDPVAAKPRRRSGPKEK 244
PN+LK+ +RR + KP RS K +
Sbjct: 67 PNALKREKRRTTNSANRKPANRSPSKRE 94
>SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)
Length = 167
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 84 SLSSMSALLAREPRTFNLSDTTAGVISLYCGT-SLYSFSYVGLSNNTWLFNLSRTFPLDH 260
+L+ +L +RE L + + I + S++ +Y GL N W +PL H
Sbjct: 100 TLTKNISLFSREIEVTTLKEHISCAIKCFVIVMSMFLPNYAGLRRNLWFTRKKPNYPLPH 159
>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
Length = 191
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 364 SKMPPKKDAKASAKQPQ 314
SKMP KK AKA+ QP+
Sbjct: 50 SKMPSKKGAKAAEAQPE 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,562,770
Number of Sequences: 59808
Number of extensions: 270260
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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