Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i06r
         (375 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   161   4e-40
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   161   4e-40
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   161   4e-40
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...   149   2e-36
BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p pro...    27   5.9  
BT010092-1|AAQ22561.1|  470|Drosophila melanogaster LD01958p pro...    27   5.9  
AY071361-1|AAL48983.1|  521|Drosophila melanogaster RE39556p pro...    27   5.9  
AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p pro...    27   5.9  
AE014297-1601|AAF54879.2|  521|Drosophila melanogaster CG7091-PA...    27   5.9  
AE014134-2656|AAG22436.2|  379|Drosophila melanogaster CG4793-PB...    27   5.9  
AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC...    27   5.9  
AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC...    27   5.9  
AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB...    27   5.9  
AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA...    27   5.9  
AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA...    27   5.9  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  161 bits (390), Expect = 4e-40
 Identities = 82/116 (70%), Positives = 87/116 (75%)
 Frame = -3

Query: 358 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 179
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 178 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 11
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  161 bits (390), Expect = 4e-40
 Identities = 82/116 (70%), Positives = 87/116 (75%)
 Frame = -3

Query: 358 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 179
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 178 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 11
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  161 bits (390), Expect = 4e-40
 Identities = 82/116 (70%), Positives = 87/116 (75%)
 Frame = -3

Query: 358 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 179
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKLYKE
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 178 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 11
           VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =  149 bits (360), Expect = 2e-36
 Identities = 77/112 (68%), Positives = 82/112 (73%)
 Frame = -3

Query: 346 KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKEVPQY 167
           KDAK+SAKQPQ                          KLNNQVLFDK TYEKLYKEVP Y
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60

Query: 166 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 11
           KLITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 61  KLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112


>BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p
           protein.
          Length = 1313

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SMSALLAREPRTFNLSDTTAGVISLYCG-TSLYSFSYVGLS 212
           ++S LL  + R F+L +T  G+I L C   S+  F+Y   S
Sbjct: 134 AISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHS 174


>BT010092-1|AAQ22561.1|  470|Drosophila melanogaster LD01958p
           protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 21  LVARV*ITCPWCWTTCLMRPFSLSSMSALLA 113
           L+  + + C W W T ++  ++LS+  ++LA
Sbjct: 438 LIGIIYVGCDWVWVTFMLAAWALSAAPSMLA 468


>AY071361-1|AAL48983.1|  521|Drosophila melanogaster RE39556p
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 54  CWTTCLMRPFSLSSMSALLAR 116
           CW  CL+  +++SSMS  L R
Sbjct: 2   CWRLCLLHRYAMSSMSWTLPR 22


>AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 327 PNSLKKHRRRRKDPVAAKPRRRSGP 253
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE014297-1601|AAF54879.2|  521|Drosophila melanogaster CG7091-PA
           protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 54  CWTTCLMRPFSLSSMSALLAR 116
           CW  CL+  +++SSMS  L R
Sbjct: 2   CWRLCLLHRYAMSSMSWTLPR 22


>AE014134-2656|AAG22436.2|  379|Drosophila melanogaster CG4793-PB,
           isoform B protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 210 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 299
           +NN  L  L+R   LDH    + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219


>AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC,
           isoform C protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 210 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 299
           +NN  L  L+R   LDH    + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219


>AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC,
           isoform C protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 327 PNSLKKHRRRRKDPVAAKPRRRSGP 253
           P+S  + R R+  P++  PRRRS P
Sbjct: 88  PHSRSRSRLRKSPPLSPPPRRRSPP 112


>AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB,
           isoform B protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 327 PNSLKKHRRRRKDPVAAKPRRRSGP 253
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA,
           isoform A protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 327 PNSLKKHRRRRKDPVAAKPRRRSGP 253
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA
           protein.
          Length = 1313

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 93  SMSALLAREPRTFNLSDTTAGVISLYCG-TSLYSFSYVGLS 212
           ++S LL  + R F+L +T  G+I L C   S+  F+Y   S
Sbjct: 134 AISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHS 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,253,407
Number of Sequences: 53049
Number of extensions: 380607
Number of successful extensions: 1137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)