Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i06r
(375 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 113 4e-26
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 29 0.82
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 3.3
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 27 3.3
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 3.3
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 27 4.4
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 5.8
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 5.8
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 5.8
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 5.8
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 26 7.6
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 26 7.6
AL117195-21|CAB55033.2| 313|Caenorhabditis elegans Hypothetical... 26 7.6
AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical... 26 7.6
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 113 bits (272), Expect = 4e-26
Identities = 62/118 (52%), Positives = 70/118 (59%)
Frame = -3
Query: 358 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 179
MPPKKD K P LNN VLFD+ TY+KLYKE
Sbjct: 1 MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57
Query: 178 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 5
V YKLITP+VVSERLKVR SLA+ L EL+ KGL+K VV HHGQV+YTRATK D +
Sbjct: 58 VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 29.5 bits (63), Expect = 0.82
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 347 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 246
E REG G + + RIRW+ +EE+V R+
Sbjct: 25 EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 93 SMSALLAREPRTFNLSDTTAGVISLYCG 176
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 84 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 221
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 84 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 221
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -3
Query: 226 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 113
N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 133 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 29
L V+GS+ + A +ELR + Q + H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 306 RRRRKDPVAAKPRRRSGP 253
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 306 RRRRKDPVAAKPRRRSGP 253
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = +1
Query: 175 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 294
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 374 SFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 243
+FQ +++ QE A NT ++ + SQ EVV ++S
Sbjct: 1077 AFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +3
Query: 105 LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 284
++ R+P ++ ++ + C S FS+V + R L F+F PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398
Query: 285 PDPS 296
P PS
Sbjct: 399 PVPS 402
>AL117195-21|CAB55033.2| 313|Caenorhabditis elegans Hypothetical
protein Y57A10A.28 protein.
Length = 313
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 54 CWTTCLMRPFSLSSMSALLAREP 122
CW +C++ F+ S +S L EP
Sbjct: 62 CWLSCMLMSFAGSFLSCFLLGEP 84
>AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical
protein Y75B8A.37 protein.
Length = 106
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 304 SVFFEAVWPKPSR 342
S+FF A+WPKP R
Sbjct: 71 SLFFVAIWPKPVR 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,954
Number of Sequences: 27780
Number of extensions: 197520
Number of successful extensions: 639
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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