Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i06r
(375 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 93 5e-20
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 91 2e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 91 2e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 85 2e-17
At4g27630.1 68417.m03971 expressed protein 31 0.33
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 29 1.3
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.3
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 28 2.3
At5g65970.1 68418.m08305 seven transmembrane MLO family protein ... 27 3.1
At5g16810.1 68418.m01969 expressed protein 27 4.1
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 5.4
At1g24706.1 68414.m03104 expressed protein 27 5.4
At5g64950.1 68418.m08170 mitochondrial transcription termination... 26 7.1
At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 7.1
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 26 9.4
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 26 9.4
At4g36670.1 68417.m05203 mannitol transporter, putative similar ... 26 9.4
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 26 9.4
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi... 26 9.4
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi... 26 9.4
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 26 9.4
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 26 9.4
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = -3
Query: 232 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 53
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ EL KG I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 52 HGQVIYTRATKG 17
Q IYTRAT G
Sbjct: 97 SSQQIYTRATHG 108
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 91.5 bits (217), Expect = 2e-19
Identities = 40/70 (57%), Positives = 55/70 (78%)
Frame = -3
Query: 232 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 53
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KG+I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 52 HGQVIYTRAT 23
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 91.5 bits (217), Expect = 2e-19
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = -3
Query: 232 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 53
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KGLI+ V H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 52 HGQVIYTRAT 23
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 84.6 bits (200), Expect = 2e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = -3
Query: 232 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 53
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ +L KG I+ V H
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112
Query: 52 HGQVIYTRAT 23
Q I TRAT
Sbjct: 113 SSQQINTRAT 122
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 30.7 bits (66), Expect = 0.33
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 39 ITCPWCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 209
I P CWTT L PF L ++ R + T V+S + +L +SY+ L
Sbjct: 4 ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 28.7 bits (61), Expect = 1.3
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 53 VLDYLFDETFFPKFDECSSRQGTSDL*PFRYDSRCD*LVLWDF-LVQFLICGFIKQHLVV 229
VLDYL FF F + Q T DL ++ V F L +FL C I H V+
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVI 1368
Query: 230 QLVTNF 247
+ TNF
Sbjct: 1369 EDYTNF 1374
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 168 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 308
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = -3
Query: 229 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 89
+++ + +KPT +K E L++PA +S+R+K++ + A + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291
>At5g65970.1 68418.m08305 seven transmembrane MLO family protein /
MLO-like protein 10 (MLO10) identical to membrane
protein Mlo10 [Arabidopsis thaliana]
gi|14091590|gb|AAK53803; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 569
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 45 CPWCWTTCLMRPFSLSSMS-ALLAREPRTFNLSDTTAGVISLYC 173
C WCWTT L L+ + A A + LS T ++L C
Sbjct: 5 CFWCWTTLLFCSQLLTGFARASSAGGAKEKGLSQTPTWAVALVC 48
>At5g16810.1 68418.m01969 expressed protein
Length = 418
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 365 FKDAAQEGREGFGQTAS-KNTEEEGRIRWRQSQEEEVVQRK 246
F+D ++ + QTAS K T + W ++E++++R+
Sbjct: 181 FRDGGKDSAADYAQTASEKTTRARSQGVWNPYEKEQMIKRR 221
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 194 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 286
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 231 NLSRTFPLDHFFFLALPPPDP 293
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 90 SSMSALLAREPRTFNLSD 143
S +++LL R+PR FNLS+
Sbjct: 196 SQLASLLRRQPRIFNLSE 213
>At1g48180.1 68414.m05378 expressed protein ; expression supported
by MPSS
Length = 239
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 135 LSDTTAGVISLYCGTSLYSFSYVGL 209
L + + +YCGTS SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 147 TAGVISLY-CGTSLYSFSYVG 206
T G I LY CG + Y FS++G
Sbjct: 25 TPGKIGLYVCGITAYDFSHIG 45
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 168 YCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFFFLALPPPDPSF 299
Y T++ S + W FN + + DHFF LA P PSF
Sbjct: 566 YVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611
>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 156 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 254
V+S+ S +F +GL TW+++ S FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 173 WDFLVQFLICGFIKQHLVVQLVTNF 247
WD L ++ ICG + Q+ + ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268
>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 279 PPPDPSFFFCVF*GCLAEAFASFLGGIFELER 374
PP PSFF GC +FAS G E+ R
Sbjct: 24 PPTVPSFFNLCGSGCWERSFASASGDYREILR 55
>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1133
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 279 PPPDPSFFFCVF*GCLAEAFASFLGGIFELER 374
PP PSFF GC +FAS G E+ R
Sbjct: 24 PPTVPSFFNLCGSGCWERSFASASGDYREILR 55
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 25.8 bits (54), Expect = 9.4
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 166 KLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 26
KL +V + VRG LARR L LR K +IK G ++ ++A
Sbjct: 212 KLDESVIVVIQAAVRGFLARREL--LRSKKVIKLQAAVRGHLVRSQA 256
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 359 DAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQ-RKSS*QVE 228
+ + G+EG + A E+EG +++E EVV+ +K S +V+
Sbjct: 174 EKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESMEVD 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,792,008
Number of Sequences: 28952
Number of extensions: 181691
Number of successful extensions: 609
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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