Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i06f
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              134   4e-32
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   4.9  
SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)                    27   6.5  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   8.6  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  134 bits (323), Expect = 4e-32
 Identities = 68/115 (59%), Positives = 78/115 (67%)
 Frame = +3

Query: 21  PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKEV 200
           PPKKD K  AK+PQ                           LNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 201 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 365
           P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 325  WCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 146
            WC     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198

Query: 145  NLSRTFPL 122
            + +R  P+
Sbjct: 2199 SRTREMPV 2206


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 199 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 116
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)
          Length = 538

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 93  HRILPSSSVFFEAVWPKPSRPSWAASLNWKD 1
           H ++P+  + F++VW +  R S+ A L WKD
Sbjct: 301 HLVIPTL-LEFDSVWLRLFRHSYKAKLLWKD 330


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 52  NSLKKHRRRRKDPVAAKPRRRSGPK 126
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 154 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 29
           WL   + TFPL  +  + + P DP  ++C  +F G    +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,277
Number of Sequences: 59808
Number of extensions: 283445
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)