Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i02r
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 104 1e-23
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 95 1e-20
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 38 0.002
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 34 0.019
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 29 0.93
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 28 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.8
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 5.0
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 6.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 8.7
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 8.7
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 104 bits (250), Expect = 1e-23
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Frame = -1
Query: 555 FMKGVPDAPRCGFSNAVVQIMRMHAVPYE---SHDVLSDENLRQGIKDYSNWPTIPQVFI 385
FMKG P P CGFS +QI+ + V + +++VLS++ LR+GIK++S+WPTIPQ++I
Sbjct: 41 FMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYI 100
Query: 384 NGEFVGGCDIMLQMHQSGELIEELKKVGIKSALLTAEEAKQGEKK 250
NGEFVGG DI+ MH+SGEL + LK++ L E+ K E++
Sbjct: 101 NGEFVGGSDILASMHKSGELHKILKEIN----ALAPEQPKDSEEE 141
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 94.7 bits (225), Expect = 1e-20
Identities = 40/81 (49%), Positives = 59/81 (72%)
Frame = -1
Query: 555 FMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGE 376
F+KG P P CGFS +V ++R V Y ++L+D+++RQG+K +S+WPT PQ++I GE
Sbjct: 162 FLKGTPSEPACGFSRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGE 221
Query: 375 FVGGCDIMLQMHQSGELIEEL 313
FVGG DI+ +M ++GEL E L
Sbjct: 222 FVGGLDIVSEMIENGELQEML 242
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = -1
Query: 525 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 355
C F A + ++ PY+++++ EN ++ + + + T+P +F +F+GG
Sbjct: 26 CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSD 85
Query: 354 MLQMHQSG---ELIEELKK 307
+ ++ SG ++I ELK+
Sbjct: 86 LNKLRSSGTLTKMIAELKE 104
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = -1
Query: 531 PRCGFSNA----VVQIMRMH--AVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFV 370
P C +S A + + +R+ AV E D + LR + S+ T+P +F+ G +
Sbjct: 74 PGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSI 133
Query: 369 GGCDIMLQMHQSGEL 325
GG D + ++Q +L
Sbjct: 134 GGSDSVRALYQEEKL 148
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.7 bits (61), Expect = 0.93
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = -1
Query: 531 PRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIM 352
P C + V+ ++ A Y+ + + + ++ + + T+P +FI+ + VGG
Sbjct: 26 PYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDF 85
Query: 351 LQMHQSGEL 325
+ + GEL
Sbjct: 86 QALFKKGEL 94
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -1
Query: 441 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALLTAEEAK 265
L G++D+ ++ I + + VG +Q +Q+G +++ELKK + +K+++L K
Sbjct: 220 LAAGLRDWVDFGVICALLLLNATVG----FVQEYQAGSIVDELKKTMALKASVLRDGRVK 275
Query: 264 QGE 256
+ E
Sbjct: 276 EIE 278
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 257 SPCFASSAVKSALFIPTFFSSSMSSPDWCICSIMSQPPTNS 379
SP SS + S+ + FSS++SS S S PT+S
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 117 YFNFNNYVFVSIQYHHLK*IKTIISNTNRKLQN 215
+F+F + + + Y+ L K++I +TN LQ+
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLIQHTNNLLQS 617
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -1
Query: 339 QSGELIEELKKVGIKSALLTAEEAK 265
+ GE ++E++K+GI+ A AEE++
Sbjct: 298 RKGEDVQEIEKIGIEIAKARAEESQ 322
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 7 YNKIIKTTQIIYGLGLSKTKNRHTLTNSYYIRDFFINTLILTIMSLFLYSTT 162
Y+++I TQ+IY L K N + IRD F++ L + +Y TT
Sbjct: 19 YSEVI--TQLIYFLTSKKITNLGKIRLVKSIRDSFLSQLENILCFFLVYRTT 68
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 421 IFYTLSKIFITQHIMALVRNCMHPHNLHNSIT 516
I YT S F+T + +R C H N +T
Sbjct: 2526 IKYTTSSFFLTDDFVRFIRVCFHSRISGNLLT 2557
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 448 ITQHIMALVRNCMHPHNLHNSITETA 525
I QH+ ++ C +P NL S++ A
Sbjct: 136 IVQHLPQMIAICTYPSNLRKSLSSLA 161
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = -1
Query: 441 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALL 283
L G++D+ ++ I + + VG +Q +Q+G +++ELKK + +K+ ++
Sbjct: 132 LAAGLRDWVDFGVICALLMLNAVVG----FVQEYQAGSIVDELKKSLALKAVVI 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,538
Number of Sequences: 5004
Number of extensions: 49158
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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