Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i02r
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065) 144 7e-35
SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065) 144 7e-35
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 64 1e-10
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19) 37 0.015
SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17) 36 0.046
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 35 0.061
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0) 32 0.57
SB_40704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9) 29 5.3
SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
Length = 152
Score = 144 bits (349), Expect = 7e-35
Identities = 76/135 (56%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Frame = -1
Query: 657 QAFNTTLKISCRAFSEA---GXXXXXXXXXXXXXXXVFMKGVPDAPRCGFSNAVVQIMRM 487
Q NT L + RAFS+A VFMKGVP P CGFSNAVVQI+RM
Sbjct: 16 QPSNTALWLRLRAFSDAVQKWTDEKIGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRM 75
Query: 486 HAVP-YESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELK 310
H V + S ++L DE LR IK++S WPTIPQV+I GEFVGGCDIM++MHQ G+LI ELK
Sbjct: 76 HGVDKFTSFNILDDEELRSRIKEFSEWPTIPQVYIGGEFVGGCDIMIKMHQEGDLIGELK 135
Query: 309 KVGIKSALLTAEEAK 265
KVGI SAL E K
Sbjct: 136 KVGIDSALAGEAEKK 150
>SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
Length = 152
Score = 144 bits (349), Expect = 7e-35
Identities = 76/135 (56%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Frame = -1
Query: 657 QAFNTTLKISCRAFSEA---GXXXXXXXXXXXXXXXVFMKGVPDAPRCGFSNAVVQIMRM 487
Q NT L + RAFS+A VFMKGVP P CGFSNAVVQI+RM
Sbjct: 16 QPSNTALWLRLRAFSDAVQKWTDEKIGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRM 75
Query: 486 HAVP-YESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELK 310
H V + S ++L DE LR IK++S WPTIPQV+I GEFVGGCDIM++MHQ G+LI ELK
Sbjct: 76 HGVDKFTSFNILDDEELRSRIKEFSEWPTIPQVYIGGEFVGGCDIMIKMHQEGDLIGELK 135
Query: 309 KVGIKSALLTAEEAK 265
KVGI SAL E K
Sbjct: 136 KVGIDSALAGEAEKK 150
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = -1
Query: 480 VPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKKVG 301
+ Y+S D+L D +R+G+K YSNWPT PQ+++ GE +GG DI+ Q + I E K G
Sbjct: 118 ISYKSFDILEDIEVREGLKKYSNWPTYPQLYVKGELIGGLDIVRQRQRKVSRIVE-KHFG 176
Query: 300 I 298
+
Sbjct: 177 V 177
>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
Length = 111
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -1
Query: 525 CGFSNAVVQIMR----MHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCD 358
C FS +++R V YE ++ +K+ + T+P VF+ G+ +GG
Sbjct: 27 CSFSIMAKKLLRDVGVSEMVVYELEQREDGHFIQDALKELTGRGTVPNVFVKGQSIGGGM 86
Query: 357 IMLQMHQSGELIEELKKVGI 298
+++QSG+L + L+ G+
Sbjct: 87 ETAELYQSGKLKQLLQDHGL 106
>SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -1
Query: 402 IPQVFINGEFVGGCDIMLQMHQSGELIEELKKVG 301
+PQV ING+F+GG + +SG+L+E LK G
Sbjct: 1 VPQVHINGKFIGGGTETEDLERSGKLLEMLKACG 34
>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
Length = 374
Score = 35.5 bits (78), Expect = 0.046
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -1
Query: 519 FSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMH 340
F N V+I ++ H V D L++ +PQVF+NG +GG +L ++
Sbjct: 246 FDNLNVEIDERDIFIHKEHQVELDRRLQE------EKAPVPQVFVNGICLGGSKELLHLN 299
Query: 339 QSGELIEEL 313
++GEL E L
Sbjct: 300 ETGELKELL 308
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 525 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 355
C F V I V Y + ++ +N +++ + + S T+P V+I G VGG DI
Sbjct: 587 CPFCKKVKAIFESINVQYTAMELDLVDNGPAIQEALLEKSGQKTVPNVYIRGNHVGGSDI 646
Query: 354 MLQMHQSGELI 322
+ ++ + +++
Sbjct: 647 ITKLQEENKIL 657
>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
Length = 382
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 438 RQGIKDYSNWPTIPQVFINGEFVGGCDIM--LQMHQSGELIEELKK 307
RQ + S T+PQ+F N VGG D + L + ELI+E+K+
Sbjct: 43 RQEAMERSGKRTVPQIFFNNIHVGGFDDLDKLSADKMEELIKEIKE 88
>SB_40704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = +1
Query: 301 THFLQFLNEFTRLVHLQHYVTTTNKFTIDKDLRYCRPIRIIFYTLSKIFITQHIMALVRN 480
T L +E R L+H T + +K Y P R++ + TQH+ A
Sbjct: 90 TQHLHAWSEKIREAVLKHNTCTPGQRRSEKKYYYTTPARLVREDQRRSITTQHLYAWSEK 149
Query: 481 CMHPHNLHNSIT 516
LHN+ T
Sbjct: 150 IREAVLLHNTCT 161
>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
Length = 766
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +1
Query: 301 THFLQFLNEFTRLVHLQHYVTTTNKFTIDKDLRYCRPIRIIFYTLSKIFITQHIMALVRN 480
T L +E R L H T + +K Y P R++ + ITQH+ A
Sbjct: 483 TQHLHAWSEKIREKVLLHNTCTPGQRRSEKQYYYTTPARLVREDQRRSIITQHLHAWSEK 542
Query: 481 CMHPHNLHNSIT 516
LHN+ T
Sbjct: 543 IREEVLLHNTCT 554
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +1
Query: 301 THFLQFLNEFTRLVHLQHYVTTTNKFTIDKDLRYCRPIRIIFYTLSKIFITQHIMALVRN 480
T L +E R L H T + +K Y P R++ + ITQH+ A
Sbjct: 563 TQHLHAWSEKIREEVLLHNTCTPGQRRSEKKYYYTTPARLVREDQRRSIITQHLHAWSEK 622
Query: 481 CMHPHNLHNSIT 516
LHN+ T
Sbjct: 623 IREEVLLHNTCT 634
>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 351 LQMHQSGELIEE-LKKVGIKSALLTAEEAKQGEK 253
+Q + G + EE L+K+ K+ LLTAE K+G+K
Sbjct: 118 VQAGEEGGMTEEVLQKLQEKATLLTAERKKRGKK 151
>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -1
Query: 555 FMKGVPDAPRCGFSNAVVQIMRM---HAVPYESHDVLSDE 445
F +P PR F++A+ R+ HA+P HDV+S++
Sbjct: 404 FTHALPLTPRIPFTHALPLTPRIPFTHALPLTPHDVMSED 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,907
Number of Sequences: 59808
Number of extensions: 349132
Number of successful extensions: 772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -