Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i02f
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 104 9e-24
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 95 7e-21
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 38 0.001
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 34 0.011
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 29 0.55
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 28 0.96
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.1
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 25 5.1
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 5.1
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 25 6.8
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 9.0
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 104 bits (249), Expect = 9e-24
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Frame = +1
Query: 217 FMKGVPDAPRCGFSNAVVQIMRMHAVPYE---SHDVLSDENLRQGIKDYSNWPTIPQVFI 387
FMKG P P CGFS +QI+ + V + +++VLS++ LR+GIK++S+WPTIPQ++I
Sbjct: 41 FMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYI 100
Query: 388 NGEFVGGCDIMLQMHQSGELIEELKKVGIKSALLTAEEAKQGEK 519
NGEFVGG DI+ MH+SGEL + LK++ L E+ K E+
Sbjct: 101 NGEFVGGSDILASMHKSGELHKILKEIN----ALAPEQPKDSEE 140
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 94.7 bits (225), Expect = 7e-21
Identities = 40/81 (49%), Positives = 59/81 (72%)
Frame = +1
Query: 217 FMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGE 396
F+KG P P CGFS +V ++R V Y ++L+D+++RQG+K +S+WPT PQ++I GE
Sbjct: 162 FLKGTPSEPACGFSRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGE 221
Query: 397 FVGGCDIMLQMHQSGELIEEL 459
FVGG DI+ +M ++GEL E L
Sbjct: 222 FVGGLDIVSEMIENGELQEML 242
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +1
Query: 247 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 417
C F A + ++ PY+++++ EN ++ + + + T+P +F +F+GG
Sbjct: 26 CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSD 85
Query: 418 MLQMHQSG---ELIEELKK 465
+ ++ SG ++I ELK+
Sbjct: 86 LNKLRSSGTLTKMIAELKE 104
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.011
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +1
Query: 241 PRCGFSNA----VVQIMRMH--AVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFV 402
P C +S A + + +R+ AV E D + LR + S+ T+P +F+ G +
Sbjct: 74 PGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSI 133
Query: 403 GGCDIMLQMHQSGEL 447
GG D + ++Q +L
Sbjct: 134 GGSDSVRALYQEEKL 148
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.7 bits (61), Expect = 0.55
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 241 PRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIM 420
P C + V+ ++ A Y+ + + + ++ + + T+P +FI+ + VGG
Sbjct: 26 PYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDF 85
Query: 421 LQMHQSGEL 447
+ + GEL
Sbjct: 86 QALFKKGEL 94
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 0.96
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALLTAEEAK 507
L G++D+ ++ I + + VG +Q +Q+G +++ELKK + +K+++L K
Sbjct: 220 LAAGLRDWVDFGVICALLLLNATVG----FVQEYQAGSIVDELKKTMALKASVLRDGRVK 275
Query: 508 QGE 516
+ E
Sbjct: 276 EIE 278
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 515 SPCFASSAVKSALFIPTFFSSSMSSPDWCICSIMSQPPTNS 393
SP SS + S+ + FSS++SS S S PT+S
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 433 QSGELIEELKKVGIKSALLTAEEAK 507
+ GE ++E++K+GI+ A AEE++
Sbjct: 298 RKGEDVQEIEKIGIEIAKARAEESQ 322
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 351 IFYTLSKIFITQHIMALVRNCMHPHNLHNSIT 256
I YT S F+T + +R C H N +T
Sbjct: 2526 IKYTTSSFFLTDDFVRFIRVCFHSRISGNLLT 2557
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 324 ITQHIMALVRNCMHPHNLHNSITETA 247
I QH+ ++ C +P NL S++ A
Sbjct: 136 IVQHLPQMIAICTYPSNLRKSLSSLA 161
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 331 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALL 489
L G++D+ ++ I + + VG +Q +Q+G +++ELKK + +K+ ++
Sbjct: 132 LAAGLRDWVDFGVICALLMLNAVVG----FVQEYQAGSIVDELKKSLALKAVVI 181
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 486 KCTFYTHFLQFLNEFTRLVHLQHYVTT 406
+C F+THF L E+T ++ Q + +
Sbjct: 286 QCWFHTHFQPMLVEYTNGINFQQGINS 312
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 358 NWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKKVG 471
+W T+ I VGG D + + GE ++ K +G
Sbjct: 41 DWKTLYNASIEKGTVGGTDFVAVVEDVGEGVDRSKYIG 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,675
Number of Sequences: 5004
Number of extensions: 35116
Number of successful extensions: 111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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