Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i02f
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)         144   4e-35
SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)         144   4e-35
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)            64   7e-11
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           37   0.009
SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_26316| Best HMM Match : TetM_leader (HMM E-Value=3.3)               36   0.026
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          36   0.026
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             35   0.035
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)                       32   0.33 
SB_40704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      29   3.0  
SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_20537| Best HMM Match : Vicilin_N (HMM E-Value=2.6)                 27   7.0  
SB_9887| Best HMM Match : Pkinase (HMM E-Value=4.1e-37)                27   7.0  

>SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score =  144 bits (349), Expect = 4e-35
 Identities = 75/135 (55%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
 Frame = +1

Query: 115 QAFNTTLKISCRAFSEA---GXXXXXXXXXXXXXXXXFMKGVPDAPRCGFSNAVVQIMRM 285
           Q  NT L +  RAFS+A                    FMKGVP  P CGFSNAVVQI+RM
Sbjct: 16  QPSNTALWLRLRAFSDAVQKWTDEKIGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRM 75

Query: 286 HAVP-YESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELK 462
           H V  + S ++L DE LR  IK++S WPTIPQV+I GEFVGGCDIM++MHQ G+LI ELK
Sbjct: 76  HGVDKFTSFNILDDEELRSRIKEFSEWPTIPQVYIGGEFVGGCDIMIKMHQEGDLIGELK 135

Query: 463 KVGIKSALLTAEEAK 507
           KVGI SAL    E K
Sbjct: 136 KVGIDSALAGEAEKK 150


>SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score =  144 bits (349), Expect = 4e-35
 Identities = 75/135 (55%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
 Frame = +1

Query: 115 QAFNTTLKISCRAFSEA---GXXXXXXXXXXXXXXXXFMKGVPDAPRCGFSNAVVQIMRM 285
           Q  NT L +  RAFS+A                    FMKGVP  P CGFSNAVVQI+RM
Sbjct: 16  QPSNTALWLRLRAFSDAVQKWTDEKIGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRM 75

Query: 286 HAVP-YESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELK 462
           H V  + S ++L DE LR  IK++S WPTIPQV+I GEFVGGCDIM++MHQ G+LI ELK
Sbjct: 76  HGVDKFTSFNILDDEELRSRIKEFSEWPTIPQVYIGGEFVGGCDIMIKMHQEGDLIGELK 135

Query: 463 KVGIKSALLTAEEAK 507
           KVGI SAL    E K
Sbjct: 136 KVGIDSALAGEAEKK 150


>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
          Length = 215

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = +1

Query: 292 VPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKKVG 471
           + Y+S D+L D  +R+G+K YSNWPT PQ+++ GE +GG DI+ Q  +    I E K  G
Sbjct: 118 ISYKSFDILEDIEVREGLKKYSNWPTYPQLYVKGELIGGLDIVRQRQRKVSRIVE-KHFG 176

Query: 472 I 474
           +
Sbjct: 177 V 177


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = +1

Query: 247 CGFSNAVVQIMR----MHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCD 414
           C FS    +++R       V YE         ++  +K+ +   T+P VF+ G+ +GG  
Sbjct: 27  CSFSIMAKKLLRDVGVSEMVVYELEQREDGHFIQDALKELTGRGTVPNVFVKGQSIGGGM 86

Query: 415 IMLQMHQSGELIEELKKVGI 474
              +++QSG+L + L+  G+
Sbjct: 87  ETAELYQSGKLKQLLQDHGL 106


>SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 370 IPQVFINGEFVGGCDIMLQMHQSGELIEELKKVG 471
           +PQV ING+F+GG      + +SG+L+E LK  G
Sbjct: 1   VPQVHINGKFIGGGTETEDLERSGKLLEMLKACG 34


>SB_26316| Best HMM Match : TetM_leader (HMM E-Value=3.3)
          Length = 65

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 516 LPLLCLFSC*KCTFYTHFLQFLNEFTRLVHLQHY---VTTTNKFTIDKDL 376
           L +LC+ SC KCT     L+F ++FT L H + +    T    FTI K L
Sbjct: 1   LSILCMLSCTKCTPSNRTLKFTDQFTVLGHRERFQKSFTILKSFTIFKIL 50


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +1

Query: 253 FSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMH 432
           F N  V+I       ++ H V  D  L++          +PQVF+NG  +GG   +L ++
Sbjct: 246 FDNLNVEIDERDIFIHKEHQVELDRRLQE------EKAPVPQVFVNGICLGGSKELLHLN 299

Query: 433 QSGELIEEL 459
           ++GEL E L
Sbjct: 300 ETGELKELL 308


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +1

Query: 247 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 417
           C F   V  I     V Y + ++   +N   +++ + + S   T+P V+I G  VGG DI
Sbjct: 587 CPFCKKVKAIFESINVQYTAMELDLVDNGPAIQEALLEKSGQKTVPNVYIRGNHVGGSDI 646

Query: 418 MLQMHQSGELI 450
           + ++ +  +++
Sbjct: 647 ITKLQEENKIL 657


>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
          Length = 382

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 334 RQGIKDYSNWPTIPQVFINGEFVGGCDIM--LQMHQSGELIEELKK 465
           RQ   + S   T+PQ+F N   VGG D +  L   +  ELI+E+K+
Sbjct: 43  RQEAMERSGKRTVPQIFFNNIHVGGFDDLDKLSADKMEELIKEIKE 88


>SB_40704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = -2

Query: 471 THFLQFLNEFTRLVHLQHYVTTTNKFTIDKDLRYCRPIRIIFYTLSKIFITQHIMALVRN 292
           T  L   +E  R   L+H   T  +   +K   Y  P R++     +   TQH+ A    
Sbjct: 90  TQHLHAWSEKIREAVLKHNTCTPGQRRSEKKYYYTTPARLVREDQRRSITTQHLYAWSEK 149

Query: 291 CMHPHNLHNSIT 256
                 LHN+ T
Sbjct: 150 IREAVLLHNTCT 161


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = -2

Query: 471 THFLQFLNEFTRLVHLQHYVTTTNKFTIDKDLRYCRPIRIIFYTLSKIFITQHIMALVRN 292
           T  L   +E  R   L H   T  +   +K   Y  P R++     +  ITQH+ A    
Sbjct: 483 TQHLHAWSEKIREKVLLHNTCTPGQRRSEKQYYYTTPARLVREDQRRSIITQHLHAWSEK 542

Query: 291 CMHPHNLHNSIT 256
                 LHN+ T
Sbjct: 543 IREEVLLHNTCT 554



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = -2

Query: 471 THFLQFLNEFTRLVHLQHYVTTTNKFTIDKDLRYCRPIRIIFYTLSKIFITQHIMALVRN 292
           T  L   +E  R   L H   T  +   +K   Y  P R++     +  ITQH+ A    
Sbjct: 563 TQHLHAWSEKIREEVLLHNTCTPGQRRSEKKYYYTTPARLVREDQRRSIITQHLHAWSEK 622

Query: 291 CMHPHNLHNSIT 256
                 LHN+ T
Sbjct: 623 IREEVLLHNTCT 634


>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 421 LQMHQSGELIEE-LKKVGIKSALLTAEEAKQGEK 519
           +Q  + G + EE L+K+  K+ LLTAE  K+G+K
Sbjct: 118 VQAGEEGGMTEEVLQKLQEKATLLTAERKKRGKK 151


>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 217 FMKGVPDAPRCGFSNAVVQIMRM---HAVPYESHDVLSDE 327
           F   +P  PR  F++A+    R+   HA+P   HDV+S++
Sbjct: 404 FTHALPLTPRIPFTHALPLTPRIPFTHALPLTPHDVMSED 443


>SB_20537| Best HMM Match : Vicilin_N (HMM E-Value=2.6)
          Length = 624

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 298 YESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQS 438
           +E H  L +   +Q  +DY N+P++P+  ++ +     D  L  H S
Sbjct: 471 HEVHANLPEHQPKQEGQDYDNYPSLPEQRLDNDDDKHSDEQLNKHPS 517


>SB_9887| Best HMM Match : Pkinase (HMM E-Value=4.1e-37)
          Length = 256

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +1

Query: 310 DVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKKVGIKSALL 489
           D+L++   +  +K Y ++     +F+  EF+ G D+M  + +     EE  +  I  ALL
Sbjct: 100 DILAEAENQWVVKMYYSFQDDYYLFLVMEFLPGGDLMTLLMKKDTFTEEETRFYIAEALL 159

Query: 490 TAEEAKQ 510
             +   Q
Sbjct: 160 AIDSIHQ 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,149,700
Number of Sequences: 59808
Number of extensions: 256690
Number of successful extensions: 629
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)