Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i01f
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    29   0.52 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   2.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   2.8  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   4.9  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   4.9  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   4.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   4.9  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   6.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.5  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   6.5  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   8.5  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 75  FEFDASNSVYFSKEEIXNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 224
           F F+ S +V+ +  E    +V+++K+ QPR N    N  IE  +N   DA
Sbjct: 637 FSFETSPTVFQTSPEEDKENVNNIKISQPR-NSLQTNGYIEGMANNVLDA 685


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 228 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 353
           ++IFL P    +G+    +D W+ F+    E DW       G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 3   DKLYFDGVKITDVKVDKLTTFFENFEFD 86
           D+L FD +K   + V  L  F  +FEFD
Sbjct: 283 DRLSFDNIKPALICVGHLLQFCSSFEFD 310


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 174 SPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIP 272
           S F V++ VD +VAS   +    AP   DN  P
Sbjct: 113 SAFTVSVPVDVDVASHVNISSPSAPSLSDNLFP 145


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
 Frame = +3

Query: 84  DASNSVYFSKEEIXNNHVHDVKVRQPRLNHS-----------PFNVNIEVDSNVASDAVV 230
           D S+       ++ +N    +    PRLNHS           P + NI  D + + D + 
Sbjct: 266 DVSDEDLHPSSQLNDNEASSLFPDTPRLNHSLSFVSLVSSLPPLDQNIMQDYHTSKDILT 325

Query: 231 KIFLAPKY-DDNGIPLTLEDN 290
            IFL   + D + +   L D+
Sbjct: 326 SIFLDVNFADSSALEAKLSDS 346


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 365 RIADNLVLTSGEFSCEPV 312
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 272 RYSVVIVFGSQEDFDNSVTGDIRINLNVNVE 180
           R ++V+V G  + FD  +T  +  ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 254 VFGSQEDFDNSVTGDIRINLN 192
           VF  +ED  NS+T D   NLN
Sbjct: 255 VFQEEEDAGNSMTEDSNFNLN 275


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 300 FFELDWFTTKLTAGQNKIIRNS 365
           F  LDWFT   +  QN+++R S
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRS 675


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 476 RHVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 324
           R + EL   + R FS   + H FS W  +F  +  FI     D  +L+  E S
Sbjct: 273 RSLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 129 NHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIPLTLED 287
           N+  +   R     H P  +   +  N  S A + + L  K D N +P+TL D
Sbjct: 486 NYYKNYSARLIHEYHIPLRLAKHLSHNYGSRAPLILELYSKTDFNKLPVTLAD 538


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 135 VHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIF 239
           + DV +   +   S FNV I   SNV  D V   F
Sbjct: 85  IFDVSLNSKKEPLSKFNVKIHFPSNVMKDGVAFSF 119


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 411 IMKMLDEGKVPFDMSEEFCY 470
           I K++D G++ FD + + CY
Sbjct: 472 IRKLIDIGEIDFDQAFKICY 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,480
Number of Sequences: 5004
Number of extensions: 38077
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)