Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i01f
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.089
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    27   5.8  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    27   5.8  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    27   5.8  
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 443 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 282
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 336 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 455
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 336 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 455
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical
           protein T18D3.3 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 99  VYFSKEEIXN-NHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVK 233
           V+ S E+I     VHD+++    ++    +V++E+D+N  S ++++
Sbjct: 278 VFSSLEDIEGVKKVHDLRIWSLTMDKIALSVHLEIDANSQSQSILR 323


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 368 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 234
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 364 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 412


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 368 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 234
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 368 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 234
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 151 TLTSWTWLFXISSLLKYTLLLASNSKFSKNVVNLSTLTS 35
           T+ S+  LF  S  + Y+L+     K S  + NLSTLT+
Sbjct: 281 TIVSYFALFAFSMFIFYSLVTVVLQKTSALMFNLSTLTA 319


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 169 TTAPSTLTLRLILMSPVTLLSKSSWLPNTMTTE 267
           TT P+T T      +P T  ++++  P T TTE
Sbjct: 117 TTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTE 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,589,651
Number of Sequences: 27780
Number of extensions: 213362
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)