Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i01f
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    29   2.4  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    29   2.4  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   3.1  
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    27   5.4  
At2g33350.1 68415.m04088 hypothetical protein                          27   5.4  
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    27   7.2  
At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal...    27   9.5  
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal...    27   9.5  
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal...    27   9.5  
At3g05680.1 68416.m00634 expressed protein                             27   9.5  

>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 117 PLY*STRCCWRRIQSSRRMLSIYR 46
           P+Y ST  CW++I  S  + S YR
Sbjct: 276 PMYRSTLDCWKKIYRSEGLASFYR 299


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +3

Query: 189 NIEVDSNVASDAVVK--IFLAPKYDDNGIPLTLEDNWMKFFELDWFTTKLTAGQNKIIRN 362
           +I V    +++AVVK      PK   + +   LEDN    ++  +F  K     +K + N
Sbjct: 86  DITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERYFHGKPQNSFHKAV-N 144

Query: 363 SNEFVIFKEDSVPMTEIMKMLDEGKVP 443
             + V+F      +++I+K  +E KVP
Sbjct: 145 IPDVVVFPRSEEEVSKILKSCNEYKVP 171


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 257 IVFGSQEDFDNSVTGDIRINLNV 189
           I+F SQ+DFDN +T  I  + ++
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 180 FNVNIEVDSNVASDAVVKIFLAPKYDDNGI 269
           F V   VDSN+A D+  K  LAP  +  GI
Sbjct: 14  FGVISSVDSNIAYDSTGKYVLAPALEKVGI 43


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 257 IVFGSQEDFDNSVTGDI 207
           I+F SQEDF+N +T  I
Sbjct: 127 IIFDSQEDFENDITASI 143


>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
 Frame = +3

Query: 60  TFFENFEFDASNSVYFSKEEIXNNHVHDVKVRQPRLNHS------PFNVNIEVDSNVASD 221
           +FF+NF  +  +   +    I       + +  P L+H+       FN +I +  +   D
Sbjct: 85  SFFQNFTLNNGDQAEYFHPYIIKPSTSSLSISYPSLSHNSAFIYEAFNADITITGSDGPD 144

Query: 222 A-VVKIFLAPKYDDNGIPLTLEDNWMKFF 305
               K  L   + D G+ L    + ++FF
Sbjct: 145 PHSRKSHLISSFSDLGVTLDFPSSNLRFF 173


>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 382

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 FFELDWFTTKLTAGQNKI 353
           FFE+DWFT  L   +N +
Sbjct: 247 FFEVDWFTEYLNKAENSL 264


>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 536

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 FFELDWFTTKLTAGQNKI 353
           FFE+DWFT  L   +N +
Sbjct: 247 FFEVDWFTEYLNKAENSL 264


>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 401

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 FFELDWFTTKLTAGQNKI 353
           FFE+DWFT  L   +N +
Sbjct: 112 FFEVDWFTEYLNKAENSL 129


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 15  FDGVKITDVKVDKLTTFFENFEFDASNSVY 104
           F+GV ++D  + +LTT        + NSVY
Sbjct: 798 FEGVNLSDSSISQLTTALRILALISDNSVY 827


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,432
Number of Sequences: 28952
Number of extensions: 192086
Number of successful extensions: 600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)