SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h23f
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    97   7e-21
Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    95   4e-20
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    89   2e-18
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    89   3e-18
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    89   3e-18
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    81   7e-16
U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding p...    46   3e-05
U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding p...    46   3e-05
U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding p...    44   1e-04
U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding p...    36   0.018
U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    35   0.042
U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    33   0.17 
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    33   0.17 
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical...    29   2.8  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    27   8.5  
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    27   8.5  
U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical...    27   8.5  

>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 97.5 bits (232), Expect = 7e-21
 Identities = 48/98 (48%), Positives = 65/98 (66%)
 Frame = +1

Query: 76  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 255
           +  EFVG+ +K+  SENF+E+MK +GVGLITRKAA  + PT+E++ +GD +     STFK
Sbjct: 1   MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59

Query: 256 TTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQK 369
            T + FK G+EF+E   DG  VKSV  FE      +QK
Sbjct: 60  NTTLSFKLGQEFDETTPDGRTVKSVVNFENGKFIHIQK 97


>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
 Frame = +1

Query: 85  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 264
           +F+G+ +K+  +ENFDE+MK IGVGLITRKAA  + P +E+R DG+ +N    STFK T+
Sbjct: 6   DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64

Query: 265 MKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT-- 438
           + FK GEEF E+  D     S+ TFE   L   Q        + V     E  K + T  
Sbjct: 65  LSFKLGEEFVENSPDDRTYNSLFTFENGKLTHRQNKIKENHKSSVLTTWLENGKLIQTYQ 124

Query: 439 AKDVTCTRVYK 471
           + DV C R ++
Sbjct: 125 SGDVICRREWE 135


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
 Frame = +1

Query: 85  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 264
           +FVG+ +K+  SENF++++K +GVGL+ RKAA A  PT+E++ +G+++++   STFK T 
Sbjct: 5   QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63

Query: 265 MKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQK--APDGLEVTYVREFGPEEMKAVMT 438
           ++F  G EF+E   DG + KS  T E   +  VQK       +    R F  E++   + 
Sbjct: 64  LEFTLGVEFDETTPDGRQFKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTLQ 123

Query: 439 AKDVTCTRVY 468
           +  V   R Y
Sbjct: 124 SGSVISRRAY 133


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
 Frame = +1

Query: 76  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 255
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 3   IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61

Query: 256 TTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAV 432
              +K+K G   +E  ADG  V SV + E + L Q++    G + + +  +    ++  V
Sbjct: 62  NYTLKWKLGTASDEKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIV 121

Query: 433 MTAKDVTCTRVYK 471
            T   V CTRVY+
Sbjct: 122 CTCNGVKCTRVYE 134


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
 Frame = +1

Query: 76  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 255
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 18  IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76

Query: 256 TTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAV 432
              +K+K G   +E  ADG  V SV + E + L Q++    G + + +  +    ++  V
Sbjct: 77  NYTLKWKLGTASDEKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIV 136

Query: 433 MTAKDVTCTRVYK 471
            T   V CTRVY+
Sbjct: 137 CTCNGVKCTRVYE 149


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 38/86 (44%), Positives = 58/86 (67%)
 Frame = +1

Query: 85  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 264
           EF+G+ +K+  SENF+E++K IGVGL+ RKAA+  +PT+E++ DGD ++    STFK  +
Sbjct: 6   EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64

Query: 265 MKFKPGEEFEEDRADGAKVKSVCTFE 342
           + FK  E+F E   D     ++ TFE
Sbjct: 65  LAFKIREKFVEIAPDERSYNTLVTFE 90


>U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform b protein.
          Length = 150

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
 Frame = +1

Query: 76  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 249
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 8   IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 66

Query: 250 FKTTEMK-FKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPE 417
            K T    ++ G+ FE +  DG   K   +F+   L +       P+    TY      +
Sbjct: 67  KKNTLYHGWELGKTFEAEGLDGVAHKITFSFKDGVLSEHHIRLNDPEHSAETYYYTIEND 126

Query: 418 EMKAVMTAKDVTCTRVYK 471
           ++   M    +TC R +K
Sbjct: 127 QLVMKMVNNGITCRRWFK 144


>U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform a protein.
          Length = 165

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
 Frame = +1

Query: 76  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 249
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 23  IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 81

Query: 250 FKTTEMK-FKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPE 417
            K T    ++ G+ FE +  DG   K   +F+   L +       P+    TY      +
Sbjct: 82  KKNTLYHGWELGKTFEAEGLDGVAHKITFSFKDGVLSEHHIRLNDPEHSAETYYYTIEND 141

Query: 418 EMKAVMTAKDVTCTRVYK 471
           ++   M    +TC R +K
Sbjct: 142 QLVMKMVNNGITCRRWFK 159


>U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding
           protein protein 4 protein.
          Length = 145

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
 Frame = +1

Query: 73  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSS 246
           S+  +F G+ Y++  SENFDEF+ + GV    R+      +T  +   ++  +YN+   +
Sbjct: 2   SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60

Query: 247 TFKTTEMK-FKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGP 414
           + K T  + ++ G++FE    DG + +    F+   L +       P+    TY      
Sbjct: 61  SKKNTNYQAWELGKKFEAPGLDGNQHEITFDFKDEILSEHHIRLNEPETSAETYFYTIDD 120

Query: 415 EEMKAV-MTAKDVTCTRVYK 471
           +    + M    + C R +K
Sbjct: 121 QNQLVMRMENNGIVCRRWFK 140


>U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding
           protein protein 1 protein.
          Length = 159

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
 Frame = +1

Query: 103 YKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP- 279
           + +  SENFDE++   G G  TRK     T      K  ++     S+     ++ +K  
Sbjct: 28  FDLDHSENFDEYLTAKGYGWFTRKLVTFATFKKVFTKTSNKNLFDYSNLTSKKDVHYKNV 87

Query: 280 --GEEFEEDRADGAKVKSVCTFEGNTLKQVQK---APDGLEVTYVREFGPEEMKAVMTAK 444
             G+ F+ +  D  K +   T +   L +  K     D  E TY   F  E +   M+  
Sbjct: 88  QLGKAFQGEGLDSTKHEITFTLKDGHLFEHHKPLEGGDAKEETYEYLFDKEFLLVRMSFN 147

Query: 445 DVTCTRVYK 471
            V   R YK
Sbjct: 148 GVEGRRFYK 156


>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
 Frame = +1

Query: 103 YKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKF--- 273
           + +  SENFDE++   G G  TRK     T      K+ ++ NL   S   + +  F   
Sbjct: 30  FDLDHSENFDEYLTAKGYGWFTRKLVTFATFKKVFAKNANK-NLFDYSNLTSKKDVFYKN 88

Query: 274 -KPGEEFEEDRADGAKVKSVCTF-EGNTLKQVQKAPDG--LEVTYVREFGPEEMKAVMTA 441
            + G +FE +  D  K +   T  +G+  +  +   +G   E TY   F  + +   M+ 
Sbjct: 89  VQIGSKFEGEGLDNTKHEVTFTLKDGHLFEHHKPLEEGESKEETYEYYFDGDFLIQKMSF 148

Query: 442 KDVTCTRVYK 471
            ++   R YK
Sbjct: 149 NNIEGRRFYK 158


>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 115 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 279
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 115 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 279
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 115 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 279
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56


>AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.17 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 169 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 297
           + A +  TP        D+  + T++T  TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 269 FISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 129
           F S++ K   VT    S +L SST    + +A+  I PT  +F NSS
Sbjct: 845 FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +1

Query: 160 LITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTF 339
           +IT+ ++  V+  +EL+   +EY L+    F    +  K  ++ +E  A   K+     F
Sbjct: 230 IITQISSLVVSKFIELKVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALF 289

Query: 340 EGNTLKQVQKAPDGLE 387
               +K  + AP  LE
Sbjct: 290 NYCQIKYKKAAPARLE 305


>U40952-2|AAA81737.1|  818|Caenorhabditis elegans Hypothetical
           protein C03B1.7 protein.
          Length = 818

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +1

Query: 139 MKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 318
           +K +  G I +K    + P + + +DG  Y        K   ++FK  E FE+   +   
Sbjct: 241 IKVLPAGKIEKKLIKELNPEMMVGRDGRRYRQKLREAEKQATVEFKL-ENFEQTNGEAQS 299

Query: 319 VKS 327
           V++
Sbjct: 300 VEN 302


>AF039048-13|AAB94231.1|  440|Caenorhabditis elegans Hypothetical
           protein F16B4.11 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 148 IGVGLITRKAANAVTPTVELRKDGDEYNL 234
           + + L+  KA N +   V +RKDGD  NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,550
Number of Sequences: 27780
Number of extensions: 268871
Number of successful extensions: 803
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -