Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21r
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    31   0.010
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   6.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.4  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   6.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 439  SASVPPSDAHISVATMDSESGRVTLNCTSSGLPSPTLIWTI-GAQRVPPD 293
            SASVP   A        +    VTL C + GLP P + W I G Q    D
Sbjct: 1302 SASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSD 1351



 Score = 29.9 bits (64), Expect = 0.024
 Identities = 18/94 (19%), Positives = 34/94 (36%)
 Frame = -2

Query: 544 VVSAELIKPPQDFNFTCEVSGERPTFRIETKSILVSASVPPSDAHISVATMDSESGRVTL 365
           V+  E ++      + C +  ++ +     +  L     PP   H            V L
Sbjct: 374 VLRIESVRKEDKGMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFL 433

Query: 364 NCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTT 263
            C +SG P+P + W +  +R+     +    Y T
Sbjct: 434 KCIASGNPTPEITWELYGRRLSNSERNQIGQYVT 467



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = -2

Query: 442 VSASVPPSDAHISVATMDSESGR-VTLNCTSSGLPSPTLIW 323
           V    P     I V      S + V L C + G PSP+  W
Sbjct: 226 VGTKAPAFSTDIKVLGYQRHSKQNVALLCPAQGFPSPSFRW 266



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 388 SESGRVTLNCTSSGLPSPTLIW 323
           S +    + C++ G P+P +IW
Sbjct: 36  SNTTGAVVECSAHGNPTPDIIW 57


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 663 CPLL*RRTDCSSSFSTRVHRQSTSQP 740
           CP+  RR   SSS +T +   S  +P
Sbjct: 52  CPVCDRRFSQSSSVTTHMRTHSGERP 77


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 663 CPLL*RRTDCSSSFSTRVHRQSTSQP 740
           CP+  RR   SSS +T +   S  +P
Sbjct: 308 CPVCDRRFSQSSSVTTHMRTHSGERP 333


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 745 NAGWEVDCLWTLVENDELQSVRLYNNGQQ 659
           +A W+VD   TL  N +   + L N G++
Sbjct: 101 SAFWDVDKWRTLFTNLQYIDINLQNKGKK 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,765
Number of Sequences: 336
Number of extensions: 3507
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)