Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21r
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    29   1.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    28   1.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   3.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   4.0  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.4  

>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 335 GRGQAARRTVEGDPARFRVHRRNADVCVARRYRS*NKNALRFDPEGRSLTGD 490
           G  +  +RT EG+   FR HR N+   +A R +         DP G S+  D
Sbjct: 6   GSTRPRKRTREGENYGFRPHRGNSQELLAARIK--KDITFLADPRGNSVAAD 55


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 244 SAVSYSWADAGLPATCTPETHRRGRTTPAAPAQYSGA 134
           +AV++SW+++ + ATC P T+    T P     Y+ +
Sbjct: 696 AAVTFSWSESTIIATCPPATN--AGTVPVTFQNYNSS 730


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 583 CRETSEKGVTGACVVSAELIKPPQDFNF 500
           C E   K ++  C  +AE++KP Q F +
Sbjct: 569 CDECGHKPMSHTCYFNAEMLKPIQKFGY 596


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 283 SAWNYTTKVYDAWSAVSYS 227
           S WN+ T +  AW A+SY+
Sbjct: 574 SLWNFITMLGTAWPAISYT 592


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -2

Query: 736 WEVDCLWTLVENDELQSVRLYNNGQQFFI---YRPEINGTSKS-EYYRTRAWDVRCRETS 569
           WE       V  DEL+++R+ N+    F     R +I+      EYY T  + +     +
Sbjct: 613 WENVANQFTVSFDELENIRVLNSLPSLFADGKLRGKISLVKTLVEYYDTAVFAIMQNPGN 672

Query: 568 EKGVTGACVVSAELIKPPQ 512
           +  +  AC+ S E++ P +
Sbjct: 673 DWDMIRACIGSKEILVPEE 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,298
Number of Sequences: 5004
Number of extensions: 58201
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)