Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21r
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0588 - 4354195-4355184                                           30   2.4  
07_03_0347 + 17036086-17036206,17036548-17037173                       29   3.2  
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073...    29   4.2  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    29   4.2  
08_02_1172 + 24898290-24899141,24900864-24901328                       29   5.6  
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791           29   5.6  
12_01_0732 + 6524622-6524634,6524907-6525511                           28   7.4  
06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179     28   7.4  

>03_01_0588 - 4354195-4355184
          Length = 329

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 253 DAWSAVSYSWADAGLPATCTPETHRRGRTTPAA 155
           DA  A+    A    P+  TP+T +RGR T AA
Sbjct: 138 DAARAIRGDRAKLNFPSATTPDTRKRGRATAAA 170


>07_03_0347 + 17036086-17036206,17036548-17037173
          Length = 248

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = -2

Query: 475 PTFRIE-TKSILVSASVPPSDAHISVATMDSE---SGRVTLNCTSSGLPSPTLIWTIGAQ 308
           PT R+E T    +  +  PS A  +VA           V+L+ T+  +P+P   WT  A 
Sbjct: 58  PTSRLEPTPRAKLDFAAAPSPARAAVAAGKENRHVDDEVSLDLTAMAMPTPMPTWT--AS 115

Query: 307 RVPPDFSSSAWNYTTKVYDAWSA 239
            +PP   +S      ++YD +SA
Sbjct: 116 PLPP--PTSPLFERGRLYDLYSA 136


>07_03_1170 -
           24505743-24505875,24506087-24506475,24507133-24507369,
           24507967-24508136,24510196-24510316
          Length = 349

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +3

Query: 363 LRVTRPDSESI-VATLMCASLGGTEAETRMLFVSI-LKVGLSP----ETSHVKLKS*GGL 524
           LR    +S +  V TL CA +GG +A+T  L+ S+ + V +SP    E+ H  LK    L
Sbjct: 190 LRYNESESRAFEVVTLACALVGG-DADTTQLYHSLSVPVIVSPLTGDESCHNTLKFLQAL 248

Query: 525 ISSADTTH 548
           I S    H
Sbjct: 249 IGSVPLAH 256


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 429 YRLATHTSALRRWTLNRAGSPST--VRLAACPRP 334
           Y+LA H +A    + +RAGSPST    L AC  P
Sbjct: 528 YKLALHCAATLPMSNDRAGSPSTSLYHLTACRLP 561


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 342 GRPLDVQLRVTRPDSESIVATLMCASLGGTEAETRMLFVSILKVGLSPETSHVKLKS*GG 521
           G P+DV++  T  D ++ VA  +    GGTEA+   L   +   G+  E      K  GG
Sbjct: 171 GDPMDVEVAGTTADIDAAVALRIGLPAGGTEAD---LLSGLTGAGVEHEEEEEDCKVDGG 227


>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
          Length = 507

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 250 AWSAVSYSWADAGLPATCTPETHRRGRTTPAAP--AQYSGARGGAG 119
           A S+ S SW + G     T    R G     AP  A +SG+ GG G
Sbjct: 13  ASSSSSLSWKEGGAAPPLTATVARGGADLSHAPTPASHSGSHGGGG 58


>12_01_0732 + 6524622-6524634,6524907-6525511
          Length = 205

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 463 IETKSILVSASVPPSDAHISVATMDSESGRVTLNCTSSGLPSPTLIW 323
           + T + L S  +PP  A ++++++   S   T     SG+P+PTL W
Sbjct: 151 VATYNALFSQPLPPDHA-MALSSLFPSSLHPTHRLEYSGIPNPTLHW 196


>06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179
          Length = 180

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 306 GSLQISRAAHGTIQPRCTTRGPRCH 232
           G L  S   H  + P C+T G RCH
Sbjct: 37  GCLVHSHTYHKMLSPSCSTAGARCH 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,332,821
Number of Sequences: 37544
Number of extensions: 454374
Number of successful extensions: 1433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)