Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10h21r
(788 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 33 0.003
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 33 0.003
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 29 0.065
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 28 0.086
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 28 0.11
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 1.1
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 23 3.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 5.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.7
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 22 5.7
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 33.1 bits (72), Expect = 0.003
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -2
Query: 373 VTLNCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTTKVYDAWSAV--SYSWADAGLPAT 200
V+L C+++G P+P + W + +P + Y T D S V S+ + G +
Sbjct: 439 VSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVEDGGEYS 498
Query: 199 CTPETHRRGRTTPAA 155
C E +R G+ T AA
Sbjct: 499 CMAE-NRAGKVTHAA 512
Score = 30.3 bits (65), Expect = 0.021
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 505 NFTCEVSGERPTFRIETKSILVSASVPPSDAHISVATMDSESGRVTLNCTSSGLPSPTLI 326
++TC + R K + VPP + V L+C + G+P+PT++
Sbjct: 686 DYTCVAANPAAEVRYTAK---LQVKVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPTIV 742
Query: 325 W 323
W
Sbjct: 743 W 743
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 33.1 bits (72), Expect = 0.003
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -2
Query: 373 VTLNCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTTKVYDAWSAV--SYSWADAGLPAT 200
V+L C+++G P+P + W + +P + Y T D S V S+ + G +
Sbjct: 439 VSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVEDGGEYS 498
Query: 199 CTPETHRRGRTTPAA 155
C E +R G+ T AA
Sbjct: 499 CMAE-NRAGKVTHAA 512
Score = 31.1 bits (67), Expect = 0.012
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -2
Query: 544 VVSAELIKPPQDFNFTCEVSGERPTFRIETKSILVSASVPPSDAHISVATMDSESGRVTL 365
++ E + P + N++C V+ T+ ++V VPP + V L
Sbjct: 669 ILMIEHLSPDHNGNYSC-VARNLAAEVSHTQRLVVH--VPPRWIVEPTDVSVERNKHVAL 725
Query: 364 NCTSSGLPSPTLIW 323
+C + G+P+PT++W
Sbjct: 726 HCQAQGVPTPTIVW 739
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 28.7 bits (61), Expect = 0.065
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 226 WADAGLPATCTPETHRRGRTTPAAPAQYSGARGGAGERD 110
W + +P PE H R TP P + S +G GE +
Sbjct: 232 WEEVYIPLYQQPERHYERRATPPQPDRTSKDQGTIGESE 270
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 28.3 bits (60), Expect = 0.086
Identities = 21/106 (19%), Positives = 38/106 (35%)
Frame = -2
Query: 544 VVSAELIKPPQDFNFTCEVSGERPTFRIETKSILVSASVPPSDAHISVATMDSESGRVTL 365
V+ E +K + C V ++ + + + L PP + L
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDQESAQATAELKLGGRFEPPQIRQAFAEETLQPGPSMFL 413
Query: 364 NCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTTKVYDAWSAVSYS 227
C +SG P+P + W + +R+ Y T D S ++ S
Sbjct: 414 KCVASGNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNIS 459
Score = 22.6 bits (46), Expect = 4.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -2
Query: 373 VTLNCTSSGLPSPTLIWTI 317
V L C + G+P+P + W +
Sbjct: 1294 VKLPCLAVGVPAPEVTWKV 1312
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 27.9 bits (59), Expect = 0.11
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 451 SILVSASVPPSDAHISVATMDSESG-RVTLNCTSSGLPSPTLIW 323
S L S SV D + V + + G V + C +G P P L+W
Sbjct: 301 SKLYSVSVVSLDKSLEVNHISARVGDNVEIKCDVTGTPPPPLVW 344
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 24.6 bits (51), Expect = 1.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 769 DLTQKWIPNAGWEVDCLWTLVENDELQSVRLYNN 668
D KW P V+ L+ EN L + LYNN
Sbjct: 92 DYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNN 125
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 23.0 bits (47), Expect = 3.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -2
Query: 376 RVTLNCTSSGLPSPTLIW 323
++T C ++G P P + W
Sbjct: 39 KITFFCMATGFPRPEITW 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 4.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 769 DLTQKWIPNAGWEVDCLWTLVENDELQSVRLYNN 668
D KW P+ VD L E+ L + LYNN
Sbjct: 79 DYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNN 112
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 423 LATHTSALRRWTLNRAGSPSTVRLAACPRP 334
LAT R +T++ G + L+A P P
Sbjct: 347 LATREHPSRNFTMSEDGMIEVIPLSAIPEP 376
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 5.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 292 FSSSAWNYTTKVYDAWSAVSYSWA 221
F S++W ++ D++ YSWA
Sbjct: 306 FPSNSWVAINELQDSFWLEQYSWA 329
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 5.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 292 FSSSAWNYTTKVYDAWSAVSYSWA 221
F S++W ++ D++ YSWA
Sbjct: 274 FPSNSWVAINELQDSFWLEQYSWA 297
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 214 GLPATCTPETHRRGRTTPAA 155
G P PE ++ R TPAA
Sbjct: 216 GTPGYTAPEVIKQNRPTPAA 235
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,008
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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