Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21r
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56220.1 68418.m07016 expressed protein                             29   4.6  
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain...    28   6.1  
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain...    28   6.1  

>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = -2

Query: 427 PPSDAHISVATMDSESGRVTLNCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTTKVYDA 248
           PPS A +S       S R T    ++  PSP L +  G+Q    D  SS++   +  Y+ 
Sbjct: 59  PPSSAFVSALQSPYISPRATTPSITTHKPSPPLSYK-GSQ--SDDVPSSSYTPPSDQYE- 114

Query: 247 WSAVSYSWADAGLPATCTPE 188
           +S    S     L A+CTP+
Sbjct: 115 FSDEQPSDRKLKLSASCTPD 134


>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -2

Query: 439  SASVPPSDAHISVATMDSESGRVTLNCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTTK 260
            ++++PP  +H S  ++ ++SG   +N  S  + S  L+WT G+       ++ + N+ T 
Sbjct: 835  TSTLPPY-SHPSPISVSNQSG-FPINVGSWDVSSGGLLWTGGSSSTRDTTTTISGNHKTN 892

Query: 259  VYDA 248
             Y+A
Sbjct: 893  TYNA 896


>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -2

Query: 439  SASVPPSDAHISVATMDSESGRVTLNCTSSGLPSPTLIWTIGAQRVPPDFSSSAWNYTTK 260
            ++++PP  +H S  ++ ++SG   +N  S  + S  L+WT G+       ++ + N+ T 
Sbjct: 835  TSTLPPY-SHPSPISVSNQSG-FPINVGSWDVSSGGLLWTGGSSSTRDTTTTISGNHKTN 892

Query: 259  VYDA 248
             Y+A
Sbjct: 893  TYNA 896


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,104
Number of Sequences: 28952
Number of extensions: 327775
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)