SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   0.92 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    24   1.2  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   4.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.6  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 313 ILLFSIEFSCSSMIDLTQKWIPNAGWEVDCLWTLVENDELQSVRLYNNGQQ 465
           I LF+I  + S +  +T     +A W+VD   TL  N +   + L N G++
Sbjct: 81  IFLFAIYTNLSILTTVTI--FKSAFWDVDKWRTLFTNLQYIDINLQNKGKK 129


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 156 LLTFHTYSIK*CDVYTDKVCCLTILIFNFFIFYGIKR 46
           LLT  TY+      Y   VCCL + I   F  +  K+
Sbjct: 42  LLTNLTYNNTNRKYYWLNVCCLNLSIVTIFFNFATKK 78


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 461 CPLL*RRTDCSSSFSTRVHRQSTSQP 384
           CP+  RR   SSS +T +   S  +P
Sbjct: 52  CPVCDRRFSQSSSVTTHMRTHSGERP 77


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 461 CPLL*RRTDCSSSFSTRVHRQSTSQP 384
           CP+  RR   SSS +T +   S  +P
Sbjct: 308 CPVCDRRFSQSSSVTTHMRTHSGERP 333



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 376 PNAGWEVDCLWTLVENDELQS 438
           P  G +++C W+   N  LQS
Sbjct: 10  PQFGLQLECNWSSGPNATLQS 30


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 271 IIRTMMIVFKKVVVILLFSIEFSC 342
           + R    + K++  ++LFSI F+C
Sbjct: 346 LARLTQFLDKELSYLILFSIGFNC 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,070
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -