Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   1.7  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   3.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   3.9  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    26   5.2  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   5.2  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   6.9  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.1  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   9.1  

>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = +1

Query: 283 MMIVFKKVVVILLFSIEFSCSSMIDLTQKWIPNAGWEVDCL 405
           M ++  +V   +L ++     +  ++ +KW+PN  W ++ +
Sbjct: 121 MSLLINQVETAILLTMYLDNENFSEIQKKWLPNMSWPLNII 161


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 386 PAFGIHFCVRSIIELHENSI 327
           P+F  + CV+SI  +H  S+
Sbjct: 71  PSFSFYLCVKSIFHVHNESV 90


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +1

Query: 388 WEVDCLWTLVENDELQSVRLYNNGQQFFI---YRPEINGTSKS-EYYRTRAWDVRCRETS 555
           WE       V  DEL+++R+ N+    F     R +I+      EYY T  + +     +
Sbjct: 613 WENVANQFTVSFDELENIRVLNSLPSLFADGKLRGKISLVKTLVEYYDTAVFAIMQNPGN 672

Query: 556 EKGVTGACVVSAELIKPPQ 612
           +  +  AC+ S E++ P +
Sbjct: 673 DWDMIRACIGSKEILVPEE 691


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 307 VVILLFSIEFSCSSMIDLTQKWI 375
           +VI +F + ++ SSM+D ++ WI
Sbjct: 245 LVIKVFLVPYNVSSMVDCSKTWI 267


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 309 CDFTVFYRIFVQLDDRPDTEVDTECWL 389
           C FT F  IF  L    DTE D+E  L
Sbjct: 497 CPFTPFLIIFNNLVHETDTETDSETLL 523


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 105 KVCCLTILIFNFFIFYGIKRYSVTRVAARSTRSFV 1
           K CC+T  +  F   YGI  Y    V  RS  S V
Sbjct: 3   KFCCVTEKLTLFLFIYGICIYICIAVPIRSDLSTV 37


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 365 CVRSIIELHENSIENSKITTTFLN 294
           C R I +LHEN+  N  I   FLN
Sbjct: 383 CSRWICDLHENTSFNIDILPGFLN 406


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = -1

Query: 353 IIELHENSIENSKITTTFLNTIIIVRII*WLLAHEINTLIPQLCLLF 213
           I+ L +NS  +      ++++++++ +  WL  H   + +P   +LF
Sbjct: 50  IVSLFQNSDASPWQVLMYVSSVLMLILFSWLAIHIPKSSVPHALILF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,558
Number of Sequences: 5004
Number of extensions: 49031
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)