Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    30   1.3  
11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457...    28   7.1  
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259...    28   7.1  
08_02_1121 + 24457413-24457528,24458395-24458552,24458927-244590...    28   7.1  
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    27   9.4  

>04_04_1035 +
           30283456-30283536,30284823-30285359,30285508-30286512,
           30286718-30287042,30287563-30287818,30287901-30288117,
           30288743-30289095,30289330-30289833,30291267-30292467,
           30292614-30292970,30293258-30293495,30294083-30295125,
           30295234-30296649,30296731-30296855,30297036-30297314,
           30297352-30297382,30298957-30299022,30299447-30299689,
           30299848-30299898,30299980-30300071,30300182-30300249,
           30300515-30300600,30300720-30300824,30300994-30301127,
           30302403-30302436,30302620-30302892,30303019-30303288,
           30303384-30303974,30304065-30304214
          Length = 3376

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +1

Query: 130 DTISVKCQKVNNIEH*ELLLNHFLVVERNNKQSCGIRVL--ISCASSHYIIRTMMIVFKK 303
           D+IS      +++E  E LL+H  + +   K+  G   +  ISCA S +II   +   K 
Sbjct: 419 DSISNISMLFDSLEKVEALLHHENLTDDGAKRGFGFLSIQDISCAKSAFIIEKELNRAKL 478

Query: 304 VVVILLFSIEFSCSSMIDLTQKWIPN 381
             + LL  +E S        + WI N
Sbjct: 479 SCLQLLEDLERSLDLPTGRDRNWIQN 504


>11_06_0366 +
           22744584-22744835,22745248-22745335,22745657-22745702,
           22746159-22746345,22746436-22746507,22746597-22746728
          Length = 258

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +1

Query: 403 LWTLVENDEL---QSVRLYNNGQQFFIYRPEINGTSKSEYYRTRAWDVRCRETSEKGVTG 573
           +WTL++  EL    ++ L    +  ++Y P++    +  Y    +  + C E      TG
Sbjct: 183 MWTLIKRKELLVADAIVLGLRTKFMYVYVPKLTMERRIHYDEVESLSIECLE-----ATG 237

Query: 574 ACVVSAELIKPPQDSTSRV 630
             V+ A   +PPQ   ++V
Sbjct: 238 MLVLEACRNRPPQRRGNQV 256


>11_06_0363 +
           22724802-22725053,22725466-22725553,22725875-22725920,
           22726377-22726563,22726654-22726725,22726815-22726946
          Length = 258

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +1

Query: 403 LWTLVENDEL---QSVRLYNNGQQFFIYRPEINGTSKSEYYRTRAWDVRCRETSEKGVTG 573
           +WTL++  EL    ++ L    +  ++Y P++    +  Y    +  + C E      TG
Sbjct: 183 MWTLIKRKELLVADAIVLGLRTKFMYVYVPKLTMERRIHYDEVESLSIECLE-----ATG 237

Query: 574 ACVVSAELIKPPQDSTSRV 630
             V+ A   +PPQ   ++V
Sbjct: 238 MLVLEACRNRPPQRRGNQV 256


>08_02_1121 +
           24457413-24457528,24458395-24458552,24458927-24459042,
           24459735-24460400
          Length = 351

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 184 LLNHFLVVERNNKQSCGIRVLISCASS 264
           L N +L VERNNKQ+C ++V    ++S
Sbjct: 36  LWNWYLSVERNNKQTC-VKVFAELSNS 61


>10_08_0731 +
           20161962-20163628,20163721-20163862,20164181-20164490,
           20164566-20166466,20166557-20166650,20166953-20167440,
           20167919-20168599,20168870-20168944,20170148-20170210,
           20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 342 QLDDRPDTEVDTECWLGSGLSVDSSRERRTTVGTP 446
           Q D    T+VD +C +GSG + D + E +   G P
Sbjct: 379 QKDQLLSTDVDNKCVVGSGDTKDVNIENQPAFGIP 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,596
Number of Sequences: 37544
Number of extensions: 295028
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)