Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32935| Best HMM Match : ATP-synt_8 (HMM E-Value=8.5)                31   0.78 
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.78 
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_57213| Best HMM Match : CUB (HMM E-Value=0.012)                     28   7.2  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     28   7.2  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   7.2  
SB_28662| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_37516| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_32935| Best HMM Match : ATP-synt_8 (HMM E-Value=8.5)
          Length = 133

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 190 NHFLVVERNNKQSCGIRVLISCASSHYIIRTMMIVFKKVVVILLFSIEFS 339
           NH++V+  ++  S  I V+I     HY      +    + +I++F+I  S
Sbjct: 74  NHYIVISSSSSSSSSISVIIIITHRHYHHHPSPLSSSPIAIIIIFAISTS 123


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 481 PEINGTSKSEYYRTRAWDVRCRETSEKGVTGACVVSA 591
           P +   + S YYR  AWD  CR+       G C++++
Sbjct: 94  PPLVKKANSTYYRRTAWDYLCRDEMSCKNGGRCIITS 130


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -1

Query: 443  RTDCSSSFSTRVHRQSTSQPAFGIHFCVRSIIELHENSIENSKITTTFLNTIIIVR 276
            ++ CSSS   R  RQ      +G+ + + +I+E++ N I   +  T  ++  I+ R
Sbjct: 1038 QSSCSSSEQRRSKRQRNYSVVYGVSYVLITILEINLNFIICCENETKVISLEIVCR 1093


>SB_57213| Best HMM Match : CUB (HMM E-Value=0.012)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 594 FCGYYTRSCHTFFGGLTTPDVPRPSP 517
           +C  Y +  +   G LT+P+ P+PSP
Sbjct: 78  YCNSYYKPINKSSGHLTSPEFPQPSP 103


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 405  QTIHFP-TSIRYPLLCQVDHRAARKFDRKQ*NHNNFFKYYHH 283
            Q I  P T I +PL+ ++ ++  ++  +K  +H   + ++HH
Sbjct: 1346 QDIQNPCTKITHPLMAKICNKVQQQKQKKHRHHRRHYHHHHH 1387


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 594 FCGYYTRSCHTFFGGLTTPDVPRPSP 517
           +C  Y +  +   G LT+P+ P+PSP
Sbjct: 16  YCNSYYKPINKSSGHLTSPEFPQPSP 41


>SB_28662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +1

Query: 370 WIPNAGWEVDCLWTLVENDELQSVRLYNNGQQFFIYRPEINGTSKSEYYRTRAWD 534
           W+   G ++   WTL E DE +  + Y +  + ++ +P+ N       + T+  D
Sbjct: 42  WVGEKGRDIFQTWTLEEGDEKKLKKTYYDKYEAYV-KPKSNRIFSRYKFHTKTQD 95


>SB_37516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 172 H*ELLLNHFLVVERNNKQSCGIRVLISCASSHYIIR 279
           H ++L+N++ V  R+   SC +  +      H+I+R
Sbjct: 99  HFDILMNNYTVPARHTTYSCHVFTIPKFTKKHHIVR 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,131
Number of Sequences: 59808
Number of extensions: 369574
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)