Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    28   0.21 
U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase...    26   0.86 
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   8.1  

>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 434 CSSSFSTRVHRQSTSQPAFGIHFCVRSIIELHENSI 327
           CSS+ ST     + ++P+F   F + SI+ L+++SI
Sbjct: 35  CSSAGSTGTTLPTDARPSFASVFTIESILGLNQDSI 70


>U89804-1|AAD03795.1|   89|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 89

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 373 IPNAGWEVDCLWTLVENDELQSVR 444
           +P+A WE+   W L+ +++L+ V+
Sbjct: 38  LPHAEWEMSLKWQLMHDNDLKRVK 61


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 487 INGTSKSEYYRTRAWDVRCRETSEKGVTGACVVSA 591
           ++  S S     +AWD+ CR +S+   T + V S+
Sbjct: 400 VSNHSASHSASEQAWDLSCRRSSD--ATSSTVTSS 432


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,645
Number of Sequences: 2352
Number of extensions: 12414
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61886940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)