Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    28   6.4  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    28   6.4  
AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 211 RNNKQSCGIRVLI-SCASSHYIIRTMMIVFKKV 306
           R +K SCG R+ I S  + H +I T+++   K+
Sbjct: 825 RASKTSCGTRLFIHSLTAHHIVIHTVLVTASKI 857


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 211 RNNKQSCGIRVLI-SCASSHYIIRTMMIVFKKV 306
           R +K SCG R+ I S  + H +I T+++   K+
Sbjct: 833 RASKTSCGTRLFIHSLTAHHIVIHTVLVTASKI 865


>AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical
           protein Y57A10C.9 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 114 YTDKVCCLTILIFNFFIFYGIKRYSVTRVAARSTRS 7
           Y++ +    I+I + F+F GI++ S  ++ A ++ S
Sbjct: 107 YSNTIAGFLIVIMSMFVFAGIRKISARKIGATTSSS 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,525
Number of Sequences: 27780
Number of extensions: 284212
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)