Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h21f
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.81 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 355 DLTQKWIPNAGWEVDCLWTLVENDELQSVRLYNN 456
           D   KW P     V+ L+   EN  L  + LYNN
Sbjct: 92  DYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNN 125


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 355 DLTQKWIPNAGWEVDCLWTLVENDELQSVRLYNN 456
           D   KW P+    VD L    E+  L  + LYNN
Sbjct: 79  DYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNN 112


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 354 RPDTEVDTECWLGSG 398
           +   EVD   WLGSG
Sbjct: 252 KESVEVDQLSWLGSG 266


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 354 RPDTEVDTECWLGSG 398
           +   EVD   WLGSG
Sbjct: 290 KESVEVDQLSWLGSG 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,824
Number of Sequences: 438
Number of extensions: 3583
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)