Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10h20r
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748...    27   3.2  
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926...    27   5.6  
01_05_0657 + 24034198-24036306                                         27   5.6  
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873...    26   7.4  
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368...    26   7.4  
09_06_0045 + 20462866-20463309,20463417-20463722,20465262-204654...    26   9.8  
04_04_1313 - 32572594-32573793,32573827-32573832                       26   9.8  
03_01_0515 - 3864796-3865425                                           26   9.8  

>01_02_0053 +
           10673264-10674510,10674552-10674576,10674802-10674886,
           10675074-10675084
          Length = 455

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 224 TTAIPIPKTVAKKSPKS*PVDASTLLIPR 310
           T A+P+PK  A K     P D  T L+PR
Sbjct: 142 TRALPVPKIAAAKRDFGLPDDFLTSLVPR 170


>03_02_0534 -
           9267297-9267734,9268376-9268649,9268782-9268889,
           9269476-9269567,9269652-9269711,9269812-9269994
          Length = 384

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -3

Query: 176 TSLYRFIKTCHLVSAHASLE*MNMEKNISFHPIYLSSIQETS 51
           T+L+  +   H+ +AH  L+ ++M  ++  HP  ++  ++T+
Sbjct: 42  TTLFDRLSALHIAAAHGHLQVVSMALDLCVHPDVVNRHKQTA 83


>01_05_0657 + 24034198-24036306
          Length = 702

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 240 IGIAVVGILACLGNYARQRARN 175
           +G+A + +L  LG+Y RQ +RN
Sbjct: 13  LGVAALFVLLILGSYRRQSSRN 34


>07_01_1021 +
           8736032-8736106,8736336-8736374,8737362-8737493,
           8737848-8737892,8738450-8739157,8740679-8740807,
           8741290-8741346,8742937-8742954
          Length = 400

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 156 DEPI*TRFSPFAVRNYPNRLKFLQRLYRYLKQ*PKSHQSRNL 281
           DEP   RF PFA      R  +   L   L   PKS + R L
Sbjct: 45  DEPFEVRFIPFARHANIRRKAYESFLVHLLGSIPKSKEGRRL 86


>02_03_0231 -
           16636377-16636403,16636590-16636645,16636793-16636853,
           16637590-16637649,16638007-16638096,16638775-16638906,
           16639016-16639293,16639916-16639949,16640036-16640105,
           16641170-16641282,16641654-16641836,16642106-16642283,
           16642958-16643142,16643347-16643477,16643620-16643772,
           16643849-16643995,16644662-16644737
          Length = 657

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 103 KKISHSIPYTCHLSKKLPSYIE*VKSTNLPVS 8
           KK S S+P    LS+K+PS  E V S+  P S
Sbjct: 444 KKSSESLPADSSLSRKVPSSGEYVNSSQGPGS 475


>09_06_0045 +
           20462866-20463309,20463417-20463722,20465262-20465423,
           20465539-20465814,20466149-20466499
          Length = 512

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 330 CFLLFTILGISNVEASTGYDFGDFLA 253
           C LL  +   S   A+ G+D+GD LA
Sbjct: 22  CCLLLALAAPSAAAAAAGHDYGDALA 47


>04_04_1313 - 32572594-32573793,32573827-32573832
          Length = 401

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 40  LYSLEVSWIDDRYMGWNEIFFSIFIYSRLACAETRWQVLMNLYKLVSRP 186
           LY  + S  D+R+     +     I+S+  CA+ +W    N+  L + P
Sbjct: 131 LYEQDRSASDERFWSIEHMVLYNNIFSKKQCADNKWIDWKNIRDLPAMP 179


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 224 TTAIPIPKTVAKKSPKS*PVDAS 292
           TTA P P   A+ SP S P +AS
Sbjct: 25  TTAAPAPSPEAEASPPSPPTEAS 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,340
Number of Sequences: 37544
Number of extensions: 181375
Number of successful extensions: 385
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)